Query= MSMg01no060_h14.b1 MSMg01no060_h14.b1 CHROMAT_FILE:
MSMg01no060_h14.b1 PHD_FILE: MSMg01no060_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:12 2005
(261 letters)
>mm_chr1_187537237_187537903
Length = 667
Score = 474 bits (245), Expect = e-138
Identities = 259/267 (97%), Gaps = 6/267 (2%)
Strand = Plus / Plus
Query: 1 agcggctagacctgtcgtcccaagtactctgaaggttgaggcaggaagcctacacattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agcggctagacctgtcgtcccaagtactctgaaggttgaggcaggaagcctgcacattta 260
Query: 61 aggcctgtctgtagaatttagtgaaaccttagaattcaaaaagtaaagaaaggacatagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcctgtctgtagaatttagtgaaaccttagaattcaaaaagtaaagaaaggacatagg 320
Query: 121 tcaacagtggggttgagatcgagaccctgaagccacagccacagatacttttttgaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaacagtggggttgagatcgagaccctgaagccacagccacagatacttttttgaagac 380
Query: 181 aatgtttccattgtcatctactgagaaaggaaaaaaaa------cattttcaagtttcca 234
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 aatgtttccattgtcatctactgagaaaggaaaaaaaaacaaaacattttcaagtttcca 440
Query: 235 ctgtcccttactctccaaagcccaact 261
||||||||||| |||||||||||||||
Sbjct: 441 ctgtcccttacactccaaagcccaact 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 667
Length adjustment: 9
Effective length of query: 252
Effective length of database: 658
Effective search space: 165816
Effective search space used: 165816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no060_h14.g1 MSMg01no060_h14.g1 CHROMAT_FILE:
MSMg01no060_h14.g1 PHD_FILE: MSMg01no060_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:13 2005
(479 letters)
>mm_chr1_187662878_187663756
Length = 879
Score = 839 bits (434), Expect = 0.0
Identities = 467/478 (97%), Gaps = 2/478 (0%)
Strand = Plus / Minus
Query: 1 catgacaaga-gtcgaaacaagaaagctcaaaagaggagtcacacagtattctggaggaa 59
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 catgacaagaggt-gaaacaagaaagctcaaaagaggagtcacacagtattctggaggaa 619
Query: 60 ggatgatgaaccaagttgtctggaccttagctgtcaagttcaggtagagaccaggcttga 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 618 ggatgatgaaccaagttgtctggacctcagctgtcaagttcaggtagagaccaggcttga 559
Query: 120 aagctagggctggctcagcacagaagcaactcaatcataaactcagagtttatatctgat 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 558 aagctagggctggctcagcacagaagcagctcaatcataaactcagagtttatatctgat 499
Query: 180 ccaaactcaaagctctcaggaagatgaatggagcctctctatgtaagaacacggcatcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 498 ccaaactcaaagctctcaggaagatgaatggagcctctctatgtaagaacatggcatcag 439
Query: 240 ggacagatgcccatcaatatgtaaatcctccattgggacccagtaaactccagacttaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggacagatgcccatcaatatgtaaatcctccattgggacccagtaaactccagacttaca 379
Query: 300 ttattatttcaaacaccctgtgtctgcaatggagagatacagaaaaccgcattggtgatt 359
||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 378 ttattattttaaacaccctgtgtctgcaatggagagatacagaaaagtggattggtgatt 319
Query: 360 acatcacatgtaaatttgtagcaagacgtagatgaaggataagcaaagaatagccaatgg 419
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 318 acatcacatgtaaatttgaagcaagacctagatgaaggataagcaaagaatagccaatgg 259
Query: 420 ggtagtaatggcctgtgtaggtagcaagaacatctccttctttataaagcctttgagc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggtagtaatggcctgtgtaggtagcaagaacatctccttctttataaagcctttgagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
