BAC Information

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BAC

Clone NameMSMg01-060I03
Chromosome1 (Build37)
Map Location 132,324,896 - 132,325,408
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7b, LOC100042745, LOC100042740, Daf2
Downstream geneCd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060I03.T7 (MSMg01no060_i03.b1)MSMg01-060I03.TJ (MSMg01no060_i03.g1)
ACCAG286935AG286936
length715707
length of high quality
(start - end)
673 (43 - 715)624 (55 - 678)
definitionCHROMAT_FILE: MSMg01no060_i03.b1 PHD_FILE: MSMg01no060_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:15 2005CHROMAT_FILE: MSMg01no060_i03.g1 PHD_FILE: MSMg01no060_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGTTTTATGCTTTGAACCAAATTCTTTACAAAATGAAGTAAAATTTT
TGCTAGAATAGGATGGCCCATTATCTGTTTTAATAAGTTTAGGCAATCCC
ATGGCATTAAAGGCTTGTAGGCAATGATCAATTACATTTTTAGAGGCCTC
TCCTGTATGCAGAGAAGCAAAAAGAAATCCTGAACAAGTGTCAATACAAA
CATGTATATATTTTAATTTTCCAAATTCTGCATAATGAGTTACATCCATT
TGCCAAATATGATTAGGCATAAGACCTAGTGGATTAACTCTTAAATGTAG
CACTGGAAATAATATAATACATTTAGGACATTGTTTTACAATCATTCTTG
CCTGCTCCTTAGTGACCCTATGTCGGAACCTTAAGGTACGGCTAGAGAGA
TGAAATTTTTCATGATCATGCTTGGCCAAAGCAACAGGATCTGAAATTAA
GGCTTCTCCTATTAAAGCTCTGTGGATGCAATCATTGCCTTCAGCTAAAG
GTCCAGGAAGACCAGAATGAGATCGTATGTGGCCAATATAGAACAGGTGT
TTTGGGGCAAGAATGATGTTTTGCAATTGTAAAAACAAGGATCCAGCTGG
CATATTAAAGTTAAACGTACCACAAGTCTCCAATAAGGGTACCGATTGTG
CAACATATAAACTAT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCCCATCCGCGGAATTCCACATGCAAACTTCCAGACTCCAGCCC
TCTAGGCCCTGGTGCCAGTACACAGCTGCTGACCTTGTCTGGTGTGACCA
TGGCTAGAAGAGGGGCAAAATGCCCACACTCCATCATCAGGGCCTCAGGC
AGAGCACTTGTTTAGCATGTATGAAACCTTTGGTTTAATCCTCCTTGCCA
TATGAATTGGATGCAGTGGGGCATACACTCAGGAGGTGGAGGCAGGAGGA
TTAGAAGTTTGAGATCATCAGTTACATATAGAGTTTGAGGTCAGCCTGGG
TACATGAGAACCTTCCCCTTGTTTTTGATGAAAGTGAGTGAGTGGCACAG
GGAAGAACCCCGAATGAAGAAATCCTGGAATCTTAAAGCTAGAGGTTCTG
GGGGTGGAGGGGGAGACTAAAACTCAAACACACAGTGAAGACAAAATAAT
CAGTATTAGTGATAGAATAGAAGACACTACCTTTTGCAAAGCCTAGCAGT
AAAGATGGTTTGCAACTTTAATTGAATTTAATGCACAAACCCTCGAAAAA
GTACAAATTATTGATCTTGGACTATAACCAATGCAAAACCTAGATAGCTC
TGCATAGTCCACCAAATTTTATTTTATGTGAGGTTCTTTTTTGCTTTTTT
ATGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_i03.g1 MSMg01no060_i03.g1 CHROMAT_FILE:
MSMg01no060_i03.g1 PHD_FILE: MSMg01no060_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:15 2005
         (624 letters)



>mm_chr1_132324385_132325408
          Length = 1024

 Score =  862 bits (446), Expect = 0.0
 Identities = 497/514 (96%), Gaps = 2/514 (0%)
 Strand = Plus / Minus

                                                                        
Query: 23   atgcaaacttccagactccagccctctaggccctggtgccagtacacagctgctgacctt 82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 atgcaaacttccagactccagccctctaggccctggtgccagtacacagctgctgacctt 965

                                                                        
Query: 83   gtctggtgtgaccatggctagaagaggggcaaaatgcccacactccatcatcagggcctc 142
            |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 964  gtctggtgtgaccatgtctagaagaggggcaaaatgcccacactccatcaccagggcctc 905

                                                                        
Query: 143  aggcagagcacttgtttagcatgtatgaaacctttggtttaatcctccttgccatatgaa 202
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 904  aggcagagcacttgtttagcatgtatgaaacctttggattaatcctccttgccatatgaa 845

                                                                        
Query: 203  ttggatgcagtggggcatacactcaggaggtggaggcaggaggattagaagtttgagatc 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  ttggatgcagtggggcatacactcaggaggtggaggcaggaggattagaagtttgagatc 785

                                                                        
Query: 263  atcagttacatatagagtttgaggtcagcctgggtacatgagaaccttccccttgttttt 322
            |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 784  atcagttacatatagagtttgaggccagcctgggtacatgagaacctttcccttgttttt 725

                                                                        
Query: 323  gatgaaagtgagtgagtggcacagggaagaaccccgaatgaagaaa-tcctggaatctta 381
            ||||||||||||||||||||||||||||||| |  ||||||| ||| |||||||||||||
Sbjct: 724  gatgaaagtgagtgagtggcacagggaagaatcaggaatgaa-aaattcctggaatctta 666

                                                                        
Query: 382  aagctagaggttctgggggtggagggggagactaaaactcaaacacacagtgaagacaaa 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  aagctagaggttctgggggtggagggggagactaaaactcaaacacacagtgaagacaaa 606

                                                                        
Query: 442  ataatcagtattagtgatagaatagaagacactaccttttgcaaagcctagcagtaaaga 501
            |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |
Sbjct: 605  ataatcagtattagtgatagaatagaagacaccaccttctgcaaagcctagcagcaaaaa 546

                                              
Query: 502  tggtttgcaactttaattgaatttaatgcacaaa 535
            ||| ||| ||||||||||| ||||||||||||||
Sbjct: 545  tgggttgtaactttaattgtatttaatgcacaaa 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)