Query= MSMg01no060_i12.b1 MSMg01no060_i12.b1 CHROMAT_FILE:
MSMg01no060_i12.b1 PHD_FILE: MSMg01no060_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:17 2005
(204 letters)
>mm_chr1_10022334_10022938
Length = 605
Score = 381 bits (197), Expect = e-110
Identities = 203/205 (99%), Gaps = 1/205 (0%)
Strand = Plus / Minus
Query: 1 gaaaggagcctgtagtccacaatggatattagcacaggtacacagtacagcaggcctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaaaggagcctgtagtccacaatggatattagcacaggtacacagtacagcaggcctttt 346
Query: 61 gtctctgcctcgctggaactgacattcccatgtgaagcaccggcccagctgttagtaacg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 345 gtctctgcctcgctggaactgacaatcccatgtgaagcaccggcccagctgttagtaacg 286
Query: 121 tacccacgcttactatttgcctctcctgaatttggtcccatacagaagaagctgcag-aa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 285 tacccacgcttactatttgcctctcctgaatttggtcccatacagaagaagctgcagaaa 226
Query: 180 aaaactttgccttttgttatttttg 204
|||||||||||||||||||||||||
Sbjct: 225 aaaactttgccttttgttatttttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 605
Length adjustment: 8
Effective length of query: 196
Effective length of database: 597
Effective search space: 117012
Effective search space used: 117012
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no060_i12.g1 MSMg01no060_i12.g1 CHROMAT_FILE:
MSMg01no060_i12.g1 PHD_FILE: MSMg01no060_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:17 2005
(632 letters)
>mm_chr1_9870519_9871550
Length = 1032
Score = 1067 bits (552), Expect = 0.0
Identities = 613/638 (96%), Gaps = 14/638 (2%)
Strand = Plus / Plus
Query: 1 acccaggtaaatgtaaatggtagtggggctgtggtgaaataaacaggtggattgacagcg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 acccaggtaaatgtaaatggtagtggggctgtggtgaaataaacaggtggattgacaggg 260
Query: 61 tgtaggcagctcagttggtcagaaataacctttggaaggaatccttttaaatggagacta 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaggcagcttagttggtcagaaataacctttggaaggaatccttttaaatggagacta 320
Query: 121 gaaaatgtcgactcacacacacacttaaatattacagcctactacatgtctaggccatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaatgtcgactcacacacacacttaaatattacagcctactacatgtctaggccatga 380
Query: 181 actatatgccattgtatacatgccagtcatgaatcaaaacattgttatgtgtagcacgac 240
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 actatacaccattgtatacatgccagtcatgaaccaaaacattgttatgtgtagcacgac 440
Query: 241 cttgaacatgtcttccttttctggtacaacatcctctgattttttttttttaa---tata 297
||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 441 cttgaacatgtcttccttttctggtacaacatcctctgatttttt------aaaaatata 494
Query: 298 tacatacaagctaaaccattataaacaatacaacagtccatgttgtatttttt-ctctga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 495 tacatacaagctaaaccattataaacaatacaacagtccatgttgtatttttttctctga 554
Query: 357 actcttgtgaattc-agagccagtaagagaagcctgcataaaatagcaatgcaatatgtt 415
|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 555 actcttgtgaattcca-agccagtaagagaagcctgcataaaatagcaatgcattatgtt 613
Query: 416 cactgaagaaaatcactccctttatgtaccaaccaaggttataactttggtattttattg 475
||||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||||
Sbjct: 614 cactgaagaaaatcactccttttatgtaccaaccagggttatagctttggcattttattg 673
Query: 476 acttatgagtatctctgtatatcaaagtcacaaagaacctgtgggagtcagttctctcct 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 acttatgagtatctctgtatatcaaagtcacaaagaacctgtgggagtcagttctctcct 733
Query: 536 cccgcgtggctcccaggaatcagacttctcatccggcggaggagcct-tcacctttgccc 594
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 734 cccgcgtggctcccaggaatcagacttctcatcaggcggaggagc-tgtcacctttgccc 792
Query: 595 actgagctgtctccacagcctcgcttcagtattttcta 632
||||||||||||||||||||||||||||||||||||||
Sbjct: 793 actgagctgtctccacagcctcgcttcagtattttcta 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
