Query= MSMg01no060_i15.b1 MSMg01no060_i15.b1 CHROMAT_FILE:
MSMg01no060_i15.b1 PHD_FILE: MSMg01no060_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:17 2005
(657 letters)
>mm_chr1_132175284_132176345
Length = 1062
Score = 458 bits (237), Expect = e-133
Identities = 276/291 (94%), Gaps = 5/291 (1%)
Strand = Plus / Plus
Query: 7 gaattccatccaccggctccagctagttatattgtccacatttgactttaaatatctaca 66
||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||| ||||
Sbjct: 207 gaattccatccactggccccagctaattatattgtccatatttgactttaaatatgtaca 266
Query: 67 acaatgtgttaatgtacaattgaaacagttggtaaatacttaaaattcctaaagccatgg 126
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actatgtgttaatgtacaattgaaacagttggtaaatacttaaaattcctaaagccatgg 326
Query: 127 acttcagctgtcttcatctctaatcaacatcagaacccttaagtgttaagatgcaaaaga 186
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 327 acttcagctgtcttcatctctaatcaacatcagagcccttaagtgttaagacgcaaaaga 386
Query: 187 taaaatgtcttttca---agacatgagctttgtgcaagacaatttgaactcagagctagt 243
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 387 taaaatgtcttttcatcaagacatgagctttgtgcaagacaatttgaactcagagttagt 446
Query: 244 tatttcatgagagagcaaggcagtgcagaggtttct--gtcttatattctt 292
||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 447 tatttcatgagagagaaaggcagtgcagaggtttctctgtcttatattctt 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1062
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1052
Effective search space: 680644
Effective search space used: 680644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_i15.g1 MSMg01no060_i15.g1 CHROMAT_FILE:
MSMg01no060_i15.g1 PHD_FILE: MSMg01no060_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:17 2005
(533 letters)
>mm_chr1_132324384_132325316
Length = 933
Score = 824 bits (426), Expect = 0.0
Identities = 435/438 (99%)
Strand = Plus / Minus
Query: 96 aatgcccacactccatcaccagggcctcaggcagagcacttgtttagcatgtatgaaacc 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 aatgcccacactccatcaccagggcctcaggcagagcacttgtttagcatgtatgaaacc 874
Query: 156 tttggattaatcctccttgccatatgaattggatgcagtggggcatacactcaggaggtg 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tttggattaatcctccttgccatatgaattggatgcagtggggcatacactcaggaggtg 814
Query: 216 gaggcaggaggattagaagtttgagatcatcagttacatatagagtttgaggccagcctg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gaggcaggaggattagaagtttgagatcatcagttacatatagagtttgaggccagcctg 754
Query: 276 ggtacatgagaacctttcccttgtttttgatgaaagtgagtgagtggcacagggaacacc 335
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 753 ggtacatgagaacctttcccttgtttttgatgaaagtgagtgagtggcacagggaagaat 694
Query: 336 caggaatgaaaaattcctggaatcttaaagctagaggttctgggggtggagggggagact 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 caggaatgaaaaattcctggaatcttaaagctagaggttctgggggtggagggggagact 634
Query: 396 aaaactcaaacacacagtgaagacaaaataatcagtattagtgatagaatagaagacacc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaaactcaaacacacagtgaagacaaaataatcagtattagtgatagaatagaagacacc 574
Query: 456 accttctgcaaagcctagcagcaaaaatgggttgtaactttaattgtatttaatgcacaa 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 accttctgcaaagcctagcagcaaaaatgggttgtaactttaattgtatttaatgcacaa 514
Query: 516 attgtgcaagagaatggt 533
||||||||||||||||||
Sbjct: 513 attgtgcaagagaatggt 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
