XXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCATTTTT
ACCCCAACCTCAATTGCTACTGCATTGCTAATAGCAGTGGTAGCAAAACC
TAAGTAACCAATGAAGTGTGACTGACAACACTAAAAGTCACTAGCAAGAC
TAACTAAAAATCACCATCACAGGTTAACACTTGTATTACTATAAAAACTA
CACTGAAATCTAAAGCCCAGAAAGTGACAAAATAAATAATTATTTGAACT
TATTGATGACAAAAATATATTTACCTGAGGTACTGTTACCTCAAACATAT
CATTTTGATCAAAAGTCTTATATAATATGATTAATTAAAAAAACATATTA
ATTGTAAATATACTTACAAATATTTTTATCATTTAATTTTTTTCTTTTAT
TGGACATTTTCTTCATTTACATTTCAAATGTTATACCCTTTCCAGTTCTC
CCCTCTCTGGAAACCAACTATTCCATCTCTCCTTCTCCTGCCTCTATGAG
TGTGCCCCTCTATTCAGACACCTACTTCCTGCCCTGGCATTCCCCTACAG
GGGGCATCTAATCCCATTAGGCCCAAGAGCTGCCCCTCCCATTGATGTTC
AACAAGGACATATATTCGACCAGAGCCCATGGGTCCCTCCATGTGTACTT
TTTGTTAGGTGGTCTACTCAGTCCCCTGAGGCTCTGGGGGATATCTAGCC
AGCTGACAGTGTTGCTTCCCTAA

CAAAGTGTGACCTACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CANCAACAAGGNNGAACNANACCAGGTTAACGTCCACCTCCTAAANCNGA
NNAAAAGNTTCAATGAAGTAGCTGCATATATTTTAACCCACATAAGTCAA
TGGNCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAA
ACAATATCCTTCTCAATAGTCACAAATAATATAAAATACCATGGCTTGAC
TCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAATTTCAAGCCTCTGA
AGAAAGAAATTAAAGAAGATCTCAGAAGATGTTTTTTTTTCTATGCCCAG
GGATTATCAGCAGGACCAACATAGTATTTATAGCTATCTTGCCAAAAGCA
ATCTACAGATTCAATGCAATCCCCATCAAAATTACCACTCAATTATAAAA
AGAATTAGAAAGAGCAATCTGCAACTCATCTGGAATAACAAAAAACCTAG
GATAGCATAAACTCTTTTCTAGGATAAAAGAACCTCCTGGGGGAATTCCC
CCTGCCTGACCCTAAAGGTGTACCTACCGAACAAATTGTGAAAAATACCT
GTTTCGGTACTCTGTTATAGAGTACATGACCAATTAGAACCAACGGTAAT
ATCAATGGTAAGATTCCCCGAAATTCAACCACTCTACGACCTCATGGGTC
TACCTTGCACCATTCTGCATTTAGGTAATG

Query= MSMg01no060_l07.b1 MSMg01no060_l07.b1 CHROMAT_FILE:
MSMg01no060_l07.b1 PHD_FILE: MSMg01no060_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:30 2005
         (692 letters)



>mm_chr1_50102118_50103209
          Length = 1092

 Score =  857 bits (443), Expect = 0.0
 Identities = 473/483 (97%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcatttttaccccaacctcaattgctactgcattgctaatagcagtggtagcaaaa 67
           ||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 483 gaattcatttttacttcaacctcaattgctactgcattcctaatagcagtggtagcaaaa 424

                                                                       
Query: 68  cctaagtaaccaatgaagtgtgactgacaacactaaaagtcactagcaagactaactaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctaagtaaccaatgaagtgtgactgacaacactaaaagtcactagcaagactaactaaa 364

                                                                       
Query: 128 aatcaccatcacaggttaacacttgtattactataaaaactacactgaaatctaaagccc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aatcaccatcacaggttaacacttgtattactataaaaactacactgaaatctaaagccc 304

                                                                       
Query: 188 agaaagtgacaaaataaataattatttgaacttattgatgacaaaaatatatttacctga 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agaaagtgacaaaataaataattatttgaacttattgatgacaaaaatatatttacctga 244

                                                                       
Query: 248 ggtactgttacctcaaacatatcattttgatcaaaagtcttatataatatgattaattaa 307
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 243 ggtactgttacctcaaacatatcattttgatcaaaactcttatataatatgattaattaa 184

                                                                       
Query: 308 aaaaacatattaattgtaaatatacttacaaatatttttatcatttaatttttttctttt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aaaaacatattaattgtaaatatacttacaaatatttttatcatttaatttttttctttt 124

                                                                       
Query: 368 attggacattttcttcatttacatttcaaatgttataccctttccagttctcccctctct 427
            ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 123 tttggatattttcttcatttacatttcaaatgttataccctttaaagttctcccctctct 64

                                                                       
Query: 428 ggaaaccaactattccatctctccttctcctgcctctatgagtgtgcccctctattcaga 487
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 63  ggaaaccaactatcccatctctccttctcctgcctctatgagtgtgctcctctattcaga 4

              
Query: 488 cac 490
           |||
Sbjct: 3   cac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)