ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAA
TTCACCAGTGCACCAATTCATCAAATTCATCAAATACCTAAATACATCAA
TTCATCAAAGCATTTGTAAAATTATTTTTCTACGAAAATCATTTCCATTT
TTATAATTTATAGAAAATGCAGTTCTTAAATATAAAATGAAGAAATACAA
ATTACAACAAAAATACCTTTTTTATAAAGTCTTAGAGTAAATTTCAAAGC
ATATTTTTTCACCTGAAAGAAAATTATTGTATATATACTTCATGTGTCTG
TGGGGCATAAAATATTTACAAAATAAAATTTAATATTAGTATTTTGATTA
GCTGTCTGTAACTGTCAGAAAGAAGAAGTAGAGCTTTCTTTCTTAATAAA
ATGTTTGTTTTACCCCCCGCATAACCAAATTATCCTTTGTAGATTATTAA
ATATTATAATATTCTGTTAAAAATTCTGATAACATTTTTCAGAACGTTTT
CCAAAAGTTTTTGAGTTGCCTCTGTAAAGGAGCTTATTGGAGAAGTCATT
AGGTTTCCTTTCCTTTGAGGAGGAAATAGACTGAAGTAACATTTTATTCA
TTTCCTTTAATGATTTCAAGCTATCAAAAATAGAAAGTTTATAAAAGACC
TTTTGGAAAATTTTTGCAGCTGGAGTTTGACTTCTTGAAATGTAACAGTG
GCTCTGGAGAGGTTCACC

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACGTTTTGGAGCAGCTACATGATTCA
GGCATTGGGACCATGAGCCATGGCTGAGCTTTCTCTCTTGAACCCAGTCA
AACTCTCATGTGAAGGAAAATGTCACACCAACTTAGTTCAGAAACAATGG
TAACTCAATCGCTGGGTGCAATAACAAGAATCCCAGTCTTGTAAACCATA
TTAAACCTAAATCCTGCGGTGGCGAATCCTAGTGGATTCCCCACAAAGCC
AGGAGACACTATTAGCCACATCTTGCCCTCTCGATATCCCCATCCCAAGA
AGCCTCGAACTCTCTCCTGCTTAGGCCAACTGGCTTTTGATAAGGTTTAT
TTTCCCACCAATAATCATGATTGCCTTAGACACTGGCCCCAAGAATAACG
GCTTTAAAGAGGGCAAAACAAAGGTGTTATTATGTTAAGAATTTATATAT
CTACCGGAAACTAGGAAAGGGGATAGCATTTGAAATGTAATGTAAGAAAA
TATCTAATAAAATATTAACATTAAAAAAGACATTTATAAACAATAAATTA
ATTATCAAAAAAGAATGTGTATATCTAATAAGGAAAAAATCTACTTATTC
ATTTACTAAAACTAAAGTTTGACCCATGAAAAAAAGCTTACTAGACCATG
ATATTTAAATTCC

Query= MSMg01no060_m11.b1 MSMg01no060_m11.b1 CHROMAT_FILE:
MSMg01no060_m11.b1 PHD_FILE: MSMg01no060_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:35 2005
         (664 letters)



>mm_chr1_150624538_150625601
          Length = 1064

 Score = 1201 bits (621), Expect = 0.0
 Identities = 648/657 (98%), Gaps = 1/657 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaccagtgcaccaattcatcaaattcatcaaatacctaaatacatcaattcatca 67
           |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gaattccccagtgca-aaattcatcaaattcatcaaatacctaaatacatcaattcatca 834

                                                                       
Query: 68  aagcatttgtaaaattatttttctacgaaaatcatttccatttttataatttatagaaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 aagcatttgtaaaattatttttctacgaaaatcatttccatttttataatttatagaaaa 774

                                                                       
Query: 128 tgcagttcttaaatataaaatgaagaaatacaaattacaacaaaaataccttttttataa 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 773 tgcagttcttaaatataaaatgaagaaatacaaattacaacaaaaatacctgttttataa 714

                                                                       
Query: 188 agtcttagagtaaatttcaaagcatattttttcacctgaaagaaaattattgtatatata 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 agtcttagagtaaatttcaaagcatattttttcacctgaaagaaaattattgtatatata 654

                                                                       
Query: 248 cttcatgtgtctgtggggcataaaatatttacaaaataaaatttaatattagtattttga 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cttcatgtgtctgtggggcataaaatatttacaaaataaaatttaatattagtattttga 594

                                                                       
Query: 308 ttagctgtctgtaactgtcagaaagaagaagtagagctttctttcttaataaaatgtttg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttagctgtctgtaactgtcagaaagaagaagtagagctttctttcttaataaaatgtttg 534

                                                                       
Query: 368 ttttaccccccgcataaccaaattatcctttgtagattattaaatattataatattctgt 427
           |||||   || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttttatttcctgtataaccaaattatcctttgtagattattaaatattataatattctgt 474

                                                                       
Query: 428 taaaaattctgataacatttttcagaacgttttccaaaagtttttgagttgcctctgtaa 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 taaaaattctgataacatttttcagaacgttttccaaaagtttttgagttgcctctgtaa 414

                                                                       
Query: 488 aggagcttattggagaagtcattaggtttcctttcctttgaggaggaaatagactgaagt 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aggagcttattggagaagtcattaggtttcctttcctttgaggaggaaatagactgaagt 354

                                                                       
Query: 548 aacattttattcatttcctttaatgatttcaagctatcaaaaatagaaagtttataaaag 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aacattttattcatttcctttaatgatttcaagctatcaaaaatagaaagtttataaaag 294

                                                                    
Query: 608 accttttggaaaatttttgcagctggagtttgacttcttgaaatgtaacagtggctc 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 accttttggaaaatttttgcagctggagtttgacttcttgaaatgtaacagtggctc 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)