BAC Information

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BAC

Clone NameMSMg01-061A08
Chromosome1 (Build37)
Map Location 50,281,147 - 50,281,394
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666924, C230029F24Rik, LOC627430, LOC100041981, EG666962, EG666970
Downstream geneLOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061A08.T7 (MSMg01no061_a08.b1)MSMg01-061A08.TJ (MSMg01no061_a08.g1)
ACCAG287329AG287330
length724721
length of high quality
(start - end)
650 (40 - 689)647 (69 - 715)
definitionCHROMAT_FILE: MSMg01no061_a08.b1 PHD_FILE: MSMg01no061_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:53 2005CHROMAT_FILE: MSMg01no061_a08.g1 PHD_FILE: MSMg01no061_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CAATAGAGAAATCTCAAATAGAAGCACCTAGAGAAATGTTCAAAGTCCTT
AGTGATTAGATAAATGCAAATGCAAATGAGCCTGAGATTCCACCTTATAC
CTATCAGAATGGCAAAGATCAAAACCTCAGGTGACAACACATGTTGTCGA
GGATGTAGAGAAAGAGAAACACTCTCCATTGTTGGTGGAATTGCAAACTG
GTACAACCACTCTGGAAATCAATCTGGAGGTTCTTTAGAAAATTGGAAAT
AGATCTACCTGAAGACCCAGCAATACCACTCTTGGTAATATACCCAAAAG
ACGCCCCACACAGGGCATGTGTCCCACTATGTTCATAGTGGTCTTGTTTG
TGATAGCCAGAAGCTGGAAACAACCAAGATTTCCTACATTAGAGGAATAG
ATAGAGAAAATGTGGTTCATTTACACAATGGAACTACTAAGAACAAGGAC
ATCATGAGTTTTACGGGAAAATGGATGGAACTAGAAAATATCATCCTGAG
TGAGGTAACTCGGATCCAAAAGGACATGGTGTGTACTTACTAATAGTTGG
ATGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAGTACAGAATTTCCAAGA
TACAGTCTACAGAACTCANAAAGGTCAACAAGCTGATGGGCCCAAGTGAG
GATGCCTCAGTCCCACTTGGGAAG
TGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAGTTCAGTTCTGAGCCACATTTTTTAATGG
GGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTG
GATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATC
TGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAAC
TTTGGCGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAT
GCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAG
GCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGCTTTATGT
GAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTAT
GGATCGATTCACATTCTCTGAATACATAAATCAAATTGCTTATAGTTGCA
GTGTCTTTTTCTCCCCAATTAAATTTGTGTTAGTTAAAAAATTCTGTTTT
CTTCCAGCAGTCATAAATCACTCATGAATTTGTCTTCTTCAGGACCCACA
TTCATTCTGCAATAAAGTCTGAGACTAGCTGANTGACACCCTGTATTCCT
GGAAATTGTTCTTTTCTATGAGAGACCAAAAAGGAATGGACATGGCAGGA
AAGTAAAAAGAAACTGGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_a08.g1 MSMg01no061_a08.g1 CHROMAT_FILE:
MSMg01no061_a08.g1 PHD_FILE: MSMg01no061_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:53 2005
         (647 letters)



>mm_chr1_50280548_50281594
          Length = 1047

 Score =  443 bits (229), Expect = e-128
 Identities = 243/248 (97%)
 Strand = Plus / Plus

                                                                       
Query: 400 ctgaatacataaatcaaattgcttatagttgcagtgtctttttctccccaattaaatttg 459
           |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 600 ctgaatacataaatcaaattgcttatggttgtagtgtctttttctccccaattaaatttg 659

                                                                       
Query: 460 tgttagttaaaaaattctgttttcttccagcagtcataaatcactcatgaatttgtcttc 519
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 660 tgttagttaaaaaattctgttttcttccagcagtcataagtcactcatgaatttgtcttc 719

                                                                       
Query: 520 ttcaggacccacattcattctgcaataaagtctgagactagctgantgacaccctgtatt 579
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 720 ttcaggacccacattcattctgcaataaagtctgagactagctgaatgacaccctgtatt 779

                                                                       
Query: 580 cctggaaattgttcttttctatgagagaccaaaaaggaatggacatggcaggaaagtaaa 639
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 780 cctggaaattgttcttttctatgagagacaaaaaaggaatggacatggcaggaaagtaaa 839

                   
Query: 640 aagaaact 647
           ||||||||
Sbjct: 840 aagaaact 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)