BAC Information

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BAC

Clone NameMSMg01-061C04
Chromosome1 (Build37)
Map Location 180,181,500 - 180,182,154
singlet/doubletsinglet
Overlap gene5830417C01Rik
Upstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262
Downstream geneLOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061C04.T7 (MSMg01no061_c04.b1)MSMg01-061C04.TJ (MSMg01no061_c04.g1)
ACCAG287415AG287416
length729797
length of high quality
(start - end)
659 (37 - 695)49 (225 - 273)
definitionCHROMAT_FILE: MSMg01no061_c04.b1 PHD_FILE: MSMg01no061_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:02 2005CHROMAT_FILE: MSMg01no061_c04.g1 PHD_FILE: MSMg01no061_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTG
CTCTGTCCGATGCTGGTGATGGTAGGTATGCTATTGCTGTGAAGCAGAGC
AATAGTTGGCCGGAGTTCAGGCCTGGAGGTGCTCTAGGACAGTCACCACT
TTCTACAGCCTCACAAGTCACACTTCTAAAGCCAATGCCACCAATGAGGA
TTTAAAAAGCCCAAGCATATTTAAAACAAGCACCAGAAACCAACTATCTG
ATCTATTACTGCTATTATTGTTCAAACACCTACCAGAAGAAACAGTTTCA
CTTGGTTACAACTACAAAATATGTAAACTCATGTAAATTCATGACTGGAG
TTCTGACTTGTGGTTTTTCTTATGAGTTCATGTGGAGAACTCATTGTTAC
CTTCTGAGGGCAAGAAAAGCAAAGTTAATTAATCCATTGCTAATCTACAC
TGTGGAGAAGGTTGGTCTCACTAAAGAGATTTTCTTCCTTCCAACCTCAG
GGACACCAAAGTGCAAGGAATCTTGTGTCCTGACTCTCAGGTGACCTGCA
CATGAGCTGTTTATTTCCTAGAAGACTTTTACATTTCTTCAAATGTCAAA
TGTCCCAGTCAGGCATGAGAACAGCAAGTCACTTGTGTGCTGAGCTGCTG
AAATGAGGGTAAGCACAGAGATGTACCTGGCTATTTACCCAGAAATGTCT
AACTGAGGGGCCACTCCCTTGGGTCAAAA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGTTTCTAGTANAAACTACTGTTTACCTAAAAACA
GACAATGAATTTATAAAACTGGACAAAANCAAAGGTATTTCTGAAACTGG
AATTCTTAGCTTGTCAAAAAAAAAATGNTNCCAAATTANATATTTATACA
AGCTTANTCAAAGATCATATATCTCACTATATATATTACCTACATATAAT
TACATATTTTTCTATACTATTTGTTCAGNAATGTATCANGGATCTATTAC
CCCACATTTTGCATGGNTATTATTGCTTCCAAACAGGNACTGACCCTCCT
TACTTTTAACATCCACCAAAATTCCCCCATTTCAAACTTAAATTCTCCTT
ATAGCCCCCCTCTTTTACCTAAATTTTAAACCCCTTTTTCTTACCTTATT
CATAATAATTAAACTNNNNNTNNNNNNNNNNNNNTNNTNNNTTTNGTTTT
TTTATAAAAAACAACTTTTTGTTGAGGAGGGAAGGGGCTGGGGGNNNNNN
NANTTTTAAAAAACACCCCCTCTNNCNNCCCCNATTCCCCCCCCCTCCCC
CCCAAATTTTTCCCAAATTCCCCCCCCACTTCCCCACATATTTTCTAACA
NAAANAACATNNNNATATTTTTTAANAAAAAATAAAAAAATTTCCCCCCC
CACTTCTTATAATTTTTTTTAAACCCGACCTTNNNCCCCCCCCCCCAAAA
TATTTCCCTCCCAAAAAAAACTCCTTTCCTTTTTTTTTTTTATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_c04.b1 MSMg01no061_c04.b1 CHROMAT_FILE:
MSMg01no061_c04.b1 PHD_FILE: MSMg01no061_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:02 2005
         (659 letters)



>mm_chr1_180181297_180182355
          Length = 1059

 Score = 1243 bits (643), Expect = 0.0
 Identities = 652/655 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctgctctgtccgatgctggtgatggtaggtatgctattgctgtgaagcagag 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ggaattccctgctctgtaagatgctggtgatggtaggtatgctattgctgtgaagcagag 799

                                                                       
Query: 64  caatagttggccggagttcaggcctggaggtgctctaggacagtcaccactttctacagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 caatagttggccggagttcaggcctggaggtgctctaggacagtcaccactttctacagc 739

                                                                       
Query: 124 ctcacaagtcacacttctaaagccaatgccaccaatgaggatttaaaaagcccaagcata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctcacaagtcacacttctaaagccaatgccaccaatgaggatttaaaaagcccaagcata 679

                                                                       
Query: 184 tttaaaacaagcaccagaaaccaactatctgatctattactgctattattgttcaaacac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttaaaacaagcaccagaaaccaactatctgatctattactgctattattgttcaaacac 619

                                                                       
Query: 244 ctaccagaagaaacagtttcacttggttacaactacaaaatatgtaaactcatgtaaatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctaccagaagaaacagtttcacttggttacaactacaaaatatgtaaactcatgtaaatt 559

                                                                       
Query: 304 catgactggagttctgacttgtggtttttcttatgagttcatgtggagaactcattgtta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 catgactggagttctgacttgtggtttttcttatgagttcatgtggagaactcattgtta 499

                                                                       
Query: 364 ccttctgagggcaagaaaagcaaagttaattaatccattgctaatctacactgtggagaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccttctgagggcaagaaaagcaaagttaattaatccattgctaatctacactgtggagaa 439

                                                                       
Query: 424 ggttggtctcactaaagagattttcttccttccaacctcagggacaccaaagtgcaagga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggttggtctcactaaagagattttcttccttccaacctcagggacaccaaagtgcaagga 379

                                                                       
Query: 484 atcttgtgtcctgactctcaggtgacctgcacatgagctgtttatttcctagaagacttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atcttgtgtcctgactctcaggtgacctgcacatgagctgtttatttcctagaagacttt 319

                                                                       
Query: 544 tacatttcttcaaatgtcaaatgtcccagtcaggcatgagaacagcaagtcacttgtgtg 603
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tacatttcttcaaacgtcaaatgtcccagtcaggcatgagaacagcaagtcacttgtgtg 259

                                                                  
Query: 604 ctgagctgctgaaatgagggtaagcacagagatgtacctggctatttacccagaa 658
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctgagctgctgaaatgagggtaagcacagagatgtacctggctatttacccagaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)