Query= MSMg01no061_c06.b1 MSMg01no061_c06.b1 CHROMAT_FILE:
MSMg01no061_c06.b1 PHD_FILE: MSMg01no061_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:02 2005
(679 letters)
>mm_chr1_8897592_8898671
Length = 1080
Score = 1207 bits (624), Expect = 0.0
Identities = 663/676 (98%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaatctgtcctactcttggtttctaaacaaaaacctaagtttgtagtcagtca 64
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 205 gaattccaaatctgttatactcttggtttctgaacaaaaatctaagtttgtagtcagtcg 264
Query: 65 attcattcatgcaaggtaatgagtttttaaaagtgttactatatatgatatgaagtatta 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcatacatgcaaggtaatgagtttttaaaagtgttactatatatgatatgaagtatta 324
Query: 125 aagttcctttccacagatcatctaaagatttagaaaagatattaggttaaatggtttgca 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 aagttcctttccacagatcatctaaagatttagaaaagatattaggttaaatggtttgta 384
Query: 185 attgttttaaattcctcttttgtgagccaatgtcaggattttggggaatagatgctcagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgttttaaattcctcttttgtgagccaatgtcaggattttggggaatagatgctcagt 444
Query: 245 tacaggaaatgatatggaatatttgtttcagcactaattgtcccctgataactgggtagc 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 tacaggaaatgatatggaatatttgtttcaacactaattgtcccctgataactgggtagc 504
Query: 305 ttttaaaaaccttatatccctttaaattcgcaaggaagagttgtccaaaatcaattaatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 ttttaaaaaccttatatccctttaaattcgcaaggaagagttgtccaaaatgaattaatc 564
Query: 365 aatgaatcaatgaatgcagtacacatgcaaaaattctccttgaaatccaaatgtcatgct 424
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 565 aatgaatcaatgaatgcagtacacatgcaaaatttcgccttgaaatccaaatgtcatgct 624
Query: 425 atacagctaa-ttcaagttcctctactacccagtagtacctctaccctgtcccacatcag 483
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atacagctaacttcaaattcctctactacccagtagtacctctaccctgtcccacatcag 684
Query: 484 caaaagaaatcaaaatctgccaagtttctggttggaatagtaagcatagttctatagaac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaaagaaatcaaaatctgccaagtttctggttggaatagtaagcatagttctatagaac 744
Query: 544 aatttctttttccacaaaagaaaacaaggcacagactattcatcatttagaagctttaag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatttctttttccacaaaagaaaacaaggcacagactattcatcatttagaagctttaag 804
Query: 604 aaatgagttaagattacatatgctctcccctcccatcatagcacactgtctgctatagtg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaatgagttaagattacatatgctctcccctcccatcatagcacactgtctgctatagtg 864
Query: 664 tagacaggcactccaa 679
||||||||||||||||
Sbjct: 865 tagacaggcactccaa 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space: 715830
Effective search space used: 715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_c06.g1 MSMg01no061_c06.g1 CHROMAT_FILE:
MSMg01no061_c06.g1 PHD_FILE: MSMg01no061_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:02 2005
(625 letters)
>mm_chr1_9044444_9045468
Length = 1025
Score = 1091 bits (564), Expect = 0.0
Identities = 576/580 (99%)
Strand = Plus / Minus
Query: 1 ctcatagcaatggattcctcttcttcagactgtcatagagcttgggctgtaagtgtgtgc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ctcatagcagtggattcctcttcttcagactgtcatagagcttgggctgtaagtgtgtgc 521
Query: 61 cactgtgcctcctagctttactgttatttttcatggtcattagatggcaccattaatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cactgtgcctcctagctttactgttatttttcatggtcattagatggcaccattaatagt 461
Query: 121 gtgtaataatgtgatgacctaacttatattctgctatgttcaatctaaatattgcaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtgtaataatgtgatgacctaacttatattctgctatgttcaatctaaatattgcaaaga 401
Query: 181 aaacctatattcttgtttaaagatatggtactattgagttatggtctgaaatactagggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaacctatattcttgtttaaagatatggtactattgagttatggtctgaaatactagggc 341
Query: 241 atgaggtattttgggatagtaaatattaatgtcatgaatgtataaacttaattaggaatt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 340 atgaggtattttgggatagtaaatattaatgtcatgaatgcataaacttaattaggaatt 281
Query: 301 aacttattgagtaacttaggtgaaagattcttttatattaggtgattggtgtagggattt 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aagttattgagtaacttaggtgaaagattcttttatattaggtgattggtgtagggattt 221
Query: 361 tcataaaacagcttttgtgaccaggcagtggtggaatacacctttagtcccagcactcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tcataaaacagcttttgtgaccaggcagtggtggaatacacctttagtcccagcactcag 161
Query: 421 gaggcaaagaagggagatctctgcattccagcacagcctggtctacagagtgaattctgg 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 160 gaggcaaagaagggagatctctgcattccagcacagcctggtctacaaagtgaattctgg 101
Query: 481 gaaagacatgattacacagagaagcatgctcttgaaaagccacaaaaccagaatatgaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 gaaagacatgattacacagagaagcatgctcttgaaaagccacaaaaccagaatatgaac 41
Query: 541 caaaccactattaccaccaccaccaccaccaccaccacca 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 caaaccactattaccaccaccaccaccaccaccaccacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
