BAC Information

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BAC

Clone NameMSMg01-061D14
Chromosome1 (Build37)
Map Location 54,718,429 - 54,718,997
singlet/doubletsinglet
Overlap geneAnkrd44
Upstream geneLOC100042162, Dnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik
Downstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061D14.T7 (MSMg01no061_d14.b1)MSMg01-061D14.TJ (MSMg01no061_d14.g1)
ACCAG287483AG287484
length762731
length of high quality
(start - end)
269 (49 - 317)567 (66 - 632)
definitionCHROMAT_FILE: MSMg01no061_d14.b1 PHD_FILE: MSMg01no061_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:08 2005CHROMAT_FILE: MSMg01no061_d14.g1 PHD_FILE: MSMg01no061_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATCACAGCGG
AATTCCTGACCTTTTACGACTTTTATCATAAATGGGCATTGCATTGTGTC
AAATGCTTTCTCCACATCTAACCAGATGATCATGTGGTTTTTGTCTTAGA
GTTTGTTTATATAATGGATTACATTGATGGATTTCCATATACTAAACCAC
CCCTGCATCCCTGGAATGAAGCCTACTTGGTCATGATGGATGATCGTTTT
GATGTGTTCTTGGATTCGGTTTGCAAGGATTTTATTGAGTATTTTTGCAT
CGATATTCATAAGGGAAATTGTTCTGAAGTTCTCTTTCTTTGTTGAGTCT
TTATGTGGTTTAGGTATCACAGTAATTGCGGCTTCATAGAATGAATTGGG
TAGAGTAGCTTCTGTTTCTATTTTGTGGAACAGTTTGAGGAGAATTGTAA
TTACGTCTTCTTTGAAGATCTGATATAACTCTGCACTAAACCCATCTTGG
TCCTGAGCTTTTTTTGTTGTTGATGTTGTTGCAAGACTATTAATGACTGT
TTTCCATGTCTTTATGTTAAATGGTACTGTTTATATCTTTTTATCTGATT
CTGATATTTATTTTTGTTCCCTGTTCATCTGTCCTATTAATTTGCTCTTA
TTTTCCCCCTCCTTCTTCTAGTCTTTTTTTGTACTATACTCCCATTGATA
TAAATTATCTTAATTGTTTACTCTCTTTTATTTTCTTTTTAATCTTATTA
TATATTTCTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTGGTGTTGAACATTCACACTATATCTGTTGCTC
GGAGCAGCAAACGATGACAATCTATGTGTCCTGTGGCCAAGTCTTTTTAC
ACATCTGCTGATTTAATTTTTAAAGGACAAAAAAATAGGCTAACTAGACA
AAGGTAAAAATCATAAAATTGCTATGTAGAAGTGATGTAAGCACCCTAGC
TGGTGACTAAAAGTATTTTCCATGATTATCAACATAATCACAGTTCTGGT
TTCTTTGCACTTCTTTTGGGCCATGCAGCAGTCTAGGGGACATCACATAT
ATATGTCTGTCAGTGATAGCCTGTGCATACAGCAGTGATCTCATACGGTT
AGAATGGAGCTGAAGACGATTCCTTTCTTGTGTAACTTTTACTGCACCTT
TGCTGTTTAGATACACAAACCCTTGTGACCCCATGATGTCCATTAGGGTA
ATGTGTTGTGCATGTTAGCTTAGGCTTAACAGCTCTCTTGGGCAGCCTAA
GAGGGGAATAGGCTGTGCTTTCTAGCATTCTGTACAGACTCTCTGAGATA
TTCCCAGAATGCATCCCCATGCCCGCTGCACAATGTAAGTGTGTTGTCTC
TTTAGAACTGGGCAACCTCTGAGGTCATTGTTTCTCTGCCTTCTCATAGT
GAGTATACTGAGTCAGATAAAGGCCCGCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_d14.g1 MSMg01no061_d14.g1 CHROMAT_FILE:
MSMg01no061_d14.g1 PHD_FILE: MSMg01no061_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:08 2005
         (567 letters)



>mm_chr1_54718229_54719197
          Length = 969

 Score = 1050 bits (543), Expect = 0.0
 Identities = 562/569 (98%), Gaps = 2/569 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggtgttgaacattcacactatatctgttgctcggagcagcaaacgatgacaatctat 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 769 agtggtgttgaacattcacactatatctgttgcttggagcagcaaacgatgacaatctat 710

                                                                       
Query: 61  gtgtcctgtggccaagtctttttacacatctgctgatttaatttttaaaggac--aaaaa 118
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||
Sbjct: 709 gtgtcctgtggccaagtctttttacacatctgctgatttaatttttgaaggacaaaaaaa 650

                                                                       
Query: 119 aataggctaactagacaaaggtaaaaatcataaaattgctatgtagaagtgatgtaagca 178
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 649 aataggctaactagacaaaggtaaaaattataaaattgctatgtagaagtgatgtaagca 590

                                                                       
Query: 179 ccctagctggtgactaaaagtattttccatgattatcaacataatcacagttctggtttc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ccctagctggtgactaaaagtattttccatgattatcaacataatcacagttctggtttc 530

                                                                       
Query: 239 tttgcacttcttttgggccatgcagcagtctaggggacatcacatatatatgtctgtcag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tttgcacttcttttgggccatgcagcagtctaggggacatcacatatatatgtctgtcag 470

                                                                       
Query: 299 tgatagcctgtgcatacagcagtgatctcatacggttagaatggagctgaagacgattcc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgatagcctgtgcatacagcagtgatctcatacggttagaatggagctgaagacgattcc 410

                                                                       
Query: 359 tttcttgtgtaacttttactgcacctttgctgtttagatacacaaacccttgtgacccca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttcttgtgtaacttttactgcacctttgctgtttagatacacaaacccttgtgacccca 350

                                                                       
Query: 419 tgatgtccattagggtaatgtgttgtgcatgttagcttaggcttaacagctctcttgggc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgatgtccattagggtaatgtgttgtgcatgttagcttaggcttaacagctctcttgggc 290

                                                                       
Query: 479 agcctaagaggggaataggctgtgctttctagcattctgtacagactctctgagatattc 538
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 289 agcctaagaggggaataggctgtgctttctagcattgtgtacagactctctgagatattc 230

                                        
Query: 539 ccagaatgcatccccatgcccgctgcaca 567
           ||||||||||||||| |||||||||||||
Sbjct: 229 ccagaatgcatccccgtgcccgctgcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 969
Length adjustment: 10
Effective length of query: 557
Effective length of database: 959
Effective search space:   534163
Effective search space used:   534163
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)