BAC Information

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BAC

Clone NameMSMg01-061J18
Chromosome1 (Build37)
Map Location 83,210,757 - 83,211,097
singlet/doubletsinglet
Overlap genenone
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614
Downstream gene4930544G21Rik, EG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061J18.T7 (MSMg01no061_j18.b1)MSMg01-061J18.TJ (MSMg01no061_j18.g1)
ACCAG287779AG287780
length729714
length of high quality
(start - end)
---341 (74 - 414)
definitionCHROMAT_FILE: MSMg01no061_j18.b1 PHD_FILE: MSMg01no061_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:38 2005CHROMAT_FILE: MSMg01no061_j18.g1 PHD_FILE: MSMg01no061_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAAACGACTACTATAGTGCGGCACCCGCAGNANNC
NNCAGATCTTTTCAGCACGGAGGGAGNNNNANCNNCCNGAAGGACACNCC
AAAGAAAACAANGGACCAACCCCCAAAGAAAAGAGACACAAACACACAAA
CCGGCCCNCNCACCNACAACGGCAGCACCAAGAGAACANACAAGACGCCA
ANCACCGGGAGCCCCAAGGCACCCAAAAAAAAAACAGGCAAANCCATTTT
TTTGAAAACACCGCAGCCAACACCGAGAAGGGAGAGCAAAGACCCCAGAG
AAGAGAGAGCCACCCTGTTTTTTTGTCNAGGGAAGCCGACAAAACAAGGC
CAGCAACAGACTAAAGCCCCCCCCCAAAGCGCAAAGACGAGCAAAGCAGA
AAAGAGGAGGAAGAGACCAAGACACAAACGAACACGGAGGCCGCTAGCAG
ACAGGCAAAGAGAAAAAGAACAAGACAACAGCGGAGGCAAGCCCAGGACA
AAGGACACAAAACACAGACAAAACCGGAAAAAGAACACACAANAAAAGAA
CAGCCACCAACAAAAAGAAAAGAAGAGAACCCAGACGCGCCCACCCACAA
GAACAAAGACGAACGAGCCAAGGCCCAGACACCCGAGAGAAAAGCCCCTA
TATTTTTATTTCACAAAAATAAAAAAAAAAATAAAACTTGACATACACAT
ATACCACATGAAATCCACTAATAAAAACA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCTGGGAGGTTGTATCGGAGGTGGT
CCTTGTCAACCCAGCGATAGCTGAGAGACAGCTACTGCCTGGTTCAGACT
TCTGTGGGAAGCAGGTCTAAGAACACCCTGTATTGGTCTTGTTTGTTTGG
TTGCTTTCTGTTTCTGTGGAATTACTGTGACACTTTATCAGGAAGGTTTT
TAGGTGTGTGTGTTCTGTGTCTCTTTGTGTTCGGACTTGGACTGACTGTT
TTTGAGTTATGCCCTCTGGTAAAAGCCAAAGAATCCTGTCAGACCCCGAT
GCTGACCTCTTCCTTTCAGATCCTCAGCTGCCCTGCCTCCCACTCTCCAA
CTCCAGGGAGTAGGCGCACCACATCCTGCTGTGAGCGCTGTGCTCCCTCC
CCCAGTCCCGTGTGTCTTCTCTGGTGGTTGTGTCTTCTCAGGTAGCCATG
AGTCTGTTCCAAGCTCCGGTGAGGTCGGTATCTGCCCATTCGGTTCTTCT
CCTGTCCACGTTATGGAGCATTTGATAGTTTGATCGCCTGGCTCATGATG
TGCTTTCACCTCCTTACCGTCCAGAATGCGCTCCTATCCCTCTGAACTAG
GCCTACCTTATTTTCGAAAACTTGCCCCCTTTTTCTTGTTTCACTTATTT
TTTGCCTCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_j18.g1 MSMg01no061_j18.g1 CHROMAT_FILE:
MSMg01no061_j18.g1 PHD_FILE: MSMg01no061_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:38 2005
         (341 letters)



>mm_chr1_83210727_83211467
          Length = 741

 Score =  592 bits (306), Expect = e-173
 Identities = 333/342 (97%), Gaps = 2/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctgggaggttgtatcggaggtggtccttgtcaacccagcgatagctgagagacagct 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 371 tccctgggaggttgtatcggaggtggtccttctcaacccagcgatagctgagagacagct 312

                                                                       
Query: 61  actgcctggttcagacttctgtgggaagcaggtc-taagaacaccctgtattggtcttgt 119
           ||||||||||||||  |||||||||||||||||| | ||||||||||||||||||| |||
Sbjct: 311 actgcctggttcaggtttctgtgggaagcaggtcat-agaacaccctgtattggtcatgt 253

                                                                       
Query: 120 ttgtttggttgctttctgtttctgtggaattactgtgacactttatcaggaaggttttta 179
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttgtttggttactttctgtttctgtggaattactgtgacactttatcaggaaggttttta 193

                                                                       
Query: 180 ggtgtgtgtgttctgtgtctctttgtgttcggacttggactgactgtttttgagttatgc 239
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtgtgttctgtgtctctttgtgttcagacttggactgactgtttttgagttatgc 133

                                                                       
Query: 240 cctctggtaaaagccaaagaatcctgtcagaccccgatgctgacctcttcctttcagatc 299
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cctctggtaaaagcctaagaatcctgtcagaccccgatgctgacctcttcctttcagatc 73

                                                     
Query: 300 ctcagctgccctgcctcccactctccaactccagggagtagg 341
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ctcagctgccctgcctcccactctccaactccagggagtagg 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)