BAC Information

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BAC

Clone NameMSMg01-061M11
Chromosome1 (Build37)
Map Location 162,502,305 - 162,657,059
singlet/doubletdoublet
Overlap geneRabgap1l, Gpr52
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061M11.T7 (MSMg01no061_m11.b1)MSMg01-061M11.TJ (MSMg01no061_m11.g1)
ACCAG287908AG287909
length712714
length of high quality
(start - end)		668 (45 - 712)637 (76 - 712)
definitionCHROMAT_FILE: MSMg01no061_m11.b1 PHD_FILE: MSMg01no061_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:51 2005CHROMAT_FILE: MSMg01no061_m11.g1 PHD_FILE: MSMg01no061_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,502,305 - 162,502,967)(162,656,423 - 162,657,059)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCAGGGCTCTGTCCATGCTAGGCAAGCATTCTACCAACTGAACTACA
TGCCTAGCTCTGAAACAGCTTTGACCAGAGAAGAAAAGCACTCACAAGAA
AATACACAGAGCAGAGCGGTGCACCTTTGGTCCAGCAGTGTAAGCACTGT
GCCCAGACCCAGTGTTACTTCAGTGTAGGTGATACTGTGCTCAGAAGTCA
CATTGTCAGATTCCCCACAGCTTGTTCTTTTTATCTCCTTAATACATAGG
TCCATCTTTCTCAGACCTAATGATTAGAGAATGGGGAGGATCTGAGAAAA
ATCCTCTAAGATAACAATCTCATTTATTTTAAAACATATAACTTATGGTA
TCTGAAGACTAAATCAGCTAATAATTGAAAAATATATGTGACAAAATAGT
TCAAACTCCATTTTAATAAATGACAGAATTCATATTGAAGAGAAAAATAA
GACAATTCCTACTTACTATGGTAACCTTGATGAAAAAAGAATGTTTTAAA
CATTTTTTAATACACAGAAATAAGGCAATCTCTGACTCATATGTGAATGT
CTTAACAACAGCTTGTGGGATATCTTTAATCACAAATAACTGTTCCTGGG
AACTACGTCTTCAGATATTGTGGATATTTATGTAATTAAATACATCAAAG
TCCAATCCAAAA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAATATATGAATTAAACAAAATC
AGAAAAATGAAATGATGTATTCCATTTGGTGAAACAAATTCCATCTTTTT
GTAAGTGCTGAGGTCAATTGCAGCGTCTTGTTTATGATCAAGGTACCACT
GAGCTGCAATTGCAGATCAACAGTGCTAGCAGTTTCTTCTATTGGAAGGA
ATATTTTTGTTTTAAGCAAATTTAAAAAACAGTGTTTCCTAGATGAATAT
GTTCATTGAAGTTAAGAAATTTGTTATACTATTCAGTAAGATCTTACTTG
CATTTCCCAGAGTGAGTATTGACAATAGGACCTTTGAAGCCTCCTTTTTC
ACCATGTTCTTCAACCAACGCGTTGATGGGCTGAGAGGTTTGACGTCTTT
GGTGTTTCTAGCACATAGTTTGAGATGTTAATTCTGACACTTATTTGGAT
CTGGGGGCAAGAATAATTTTTAGAAAGTGTAGTATTTATTGTTCTTTGTC
ACTTTAGGGAAAAATTGAGCCATAAATAAGTACAAAAATACAAATAAAAT
TTCATAGTTACTAGAGTGACCTGACACTGAAAGCATATATACAAACATTT
TCACTATTCATCCTGGAAATCACTTATGCTCCAAAACATTGAGTGAAAAG
ACTAAGTTCTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_m11.b1 MSMg01no061_m11.b1 CHROMAT_FILE:
MSMg01no061_m11.b1 PHD_FILE: MSMg01no061_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:51 2005
         (668 letters)



>mm_chr1_162502100_162503167
          Length = 1068

 Score = 1243 bits (643), Expect = 0.0
 Identities = 658/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcagggctctgtccatgctaggcaagcattctaccaactgaactacatgcctagct 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagggctctgtgcatgctaggcaagcattctaccaactgaactacatgcctagct 265

                                                                       
Query: 66  ctgaaacagctttgaccagagaagaaaagcactcacaagaaaatacacagagcagagcgg 125
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 266 ctgaaacagctttgaccagagaagaaaagcactcacaagaaaatacacagagcagagcag 325

                                                                       
Query: 126 tgcacctttggtccagcagtgtaagcactgtgcccagacccagtgttacttcagtgtagg 185
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 326 tgcacctttggtccagcagtgtaagcgctgtgcccagacccagtgttacttcagtgtagg 385

                                                                       
Query: 186 tgatactgtgctcagaagtcacattgtcagattccccacagcttgttctttttatctcct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgatactgtgctcagaagtcacattgtcagattccccacagcttgttctttttatctcct 445

                                                                       
Query: 246 taatacataggtccatctttctcagacctaatgattagagaatggggaggatctgagaaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taatacataggtccatctttctcagacctaatgattagagaatggggaggatctgagaaa 505

                                                                       
Query: 306 aatcctctaagataacaatctcatttattttaaaacatataacttatggtatctgaagac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aatcctctaagataacaatctcatttattttaaaacatataacttatggtatctgaagac 565

                                                                       
Query: 366 taaatcagctaataattgaaaaatatatgtgacaaaatagttcaaactccattttaataa 425
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 566 taaatcagctaataattgaaaaatgtatgtgacaaaatagttcaaactccattttaataa 625

                                                                       
Query: 426 atgacagaattcatattgaagagaaaaataagacaattcctacttactatggtaaccttg 485
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atgacaaaattcatattgaagagaaaaataagacaattcctacttactatggtaaccttg 685

                                                                       
Query: 486 atgaaaaaagaatgttttaaacattttttaatacacagaaataaggcaatctctgactca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atgaaaaaagaatgttttaaacattttttaatacacagaaataaggcaatctctgactca 745

                                                                       
Query: 546 tatgtgaatgtcttaacaacagcttgtgggatatctttaatcacaaataactgttcctgg 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tatgtgaatgtcttaacaacagcttgtgggatatctttaatcacaaataactgttcctgg 805

                                                                       
Query: 606 gaactacgtcttcagatattgtggatatttatgtaattaaatacatcaaagtccaatcca 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gaactacgtcttcagatattgtggatatttatgtaattaaatacatcaaagtccaatcca 865

              
Query: 666 aaa 668
           |||
Sbjct: 866 aaa 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no061_m11.g1 MSMg01no061_m11.g1 CHROMAT_FILE:
MSMg01no061_m11.g1 PHD_FILE: MSMg01no061_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:51 2005
         (637 letters)



>mm_chr1_162656223_162657259
          Length = 1037

 Score = 1193 bits (617), Expect = 0.0
 Identities = 632/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaatatatgaattaaacaaaatcagaaaaatgaaatgatgtattccatttggtgaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cagaatatatgaattaaacaaaatcagaaaaatgaaatgatgtattccatttggtgaaac 778

                                                                       
Query: 61  aaattccatctttttgtaagtgctgaggtcaattgcagcgtcttgtttatgatcaaggta 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 777 aaattccatctttttgtaagtgctgaggtcaattgcagcatcttgtttatgatcaaggta 718

                                                                       
Query: 121 ccactgagctgcaattgcagatcaacagtgctagcagtttcttctattggaaggaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ccactgagctgcaattgcagatcaacagtgctagcagtttcttctattggaaggaatatt 658

                                                                       
Query: 181 tttgttttaagcaaatttaaaaaacagtgtttcctagatgaatatgttcattgaagttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tttgttttaagcaaatttaaaaaacagtgtttcctagatgaatatgttcattgaagttaa 598

                                                                       
Query: 241 gaaatttgttatactattcagtaagatcttacttgcatttcccagagtgagtattgacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaaatttgttatactattcagtaagatcttacttgcatttcccagagtgagtattgacaa 538

                                                                       
Query: 301 taggacctttgaagcctcctttttcaccatgttcttcaaccaacgcgttgatgggctgag 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 taggacctttgatgcctcctttttcaccatgttcttcaaccaacgcgttgatgggctgag 478

                                                                       
Query: 361 aggtttgacgtctttggtgtttctagcacatagtttgagatgttaattctgacacttatt 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aggtttgacgtcttcggtgtttctagcacatagtttgagatgttaattctgacacttatt 418

                                                                       
Query: 421 tggatctgggggcaagaataatttttagaaagtgtagtatttattgttctttgtcacttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tggatctgggggcaagaataatttttagaaagtgtagtatttattgttctttgtcacttt 358

                                                                       
Query: 481 agggaaaaattgagccataaataagtacaaaaatacaaataaaatttcatagttactaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agggaaaaattgagccataaataagtacaaaaatacaaataaaatttcatagttactaga 298

                                                                       
Query: 541 gtgacctgacactgaaagcatatatacaaacattttcactattcatcctggaaatcactt 600
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtgacctgacactaaaagcatatatacaaacattttcactattcatcctggaaatcactt 238

                                                
Query: 601 atgctccaaaacattgagtgaaaagactaagttcttc 637
           |||||||||||| ||||||||||||||||||||||||
Sbjct: 237 atgctccaaaacgttgagtgaaaagactaagttcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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