TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTATCTTATTGCCATAGTCTACAATTAAGGAAAAAACCCTTTGGGTT
CAGGAAAGCATTATTCATTATACAAAACCACTCTACACTATGTAAATAGC
CACTTAGAAGGAAATAGGTAATTTACAATGAAACATTCATCTAATAATTT
CCTAAAAGCATAAAAAGGGGAAAATATACCAAATGATCAAAGCAAAATGC
ATGCATACATAATCACCTGTACATAAATCACAACATAAGGTTGTCTTTAA
TTGGATCTCTGTTAGTTCGAGGCCAGTCTGGTCTATACAGCAAGATCCAG
GATGGCCAAGACTACACAGAGAAACCCTATTGGGGGGCAGGTGAGCAACA
TGAGAAGACTTATAAATCCACAACAGCAAGAGTCTTGAGTTTTGCTGAGT
GCAGTGGTGCGTGCCCTTACTCCTACCACTAGGGAGACAGAAGCAGGCAG
AACTCTGTGAGTTCGAGGCTAACCTGGTTTACACAGTGAGTTACAGGACA
CAAGAGCTAAGGAGGGAGAGAAAAAACAGAGAAACAAATATGTTCAAATA
AAAAAATTAATATGAAAAGATTCTGGGCTTTCAAGTAGAAAATCTATCAT
AATACTGAAAGGGTGAGAATCAAAGGGAGAAAGGTAAATTGAAGGAACAG
CAGCAGGGCCTGGCAGCTCA

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTACCTAAAGCATTTATGTGGCCT
ATGTCTGCTCTATTTAAAGAGGCACTCGGCAATCGTTTTCATTACTGTCT
CTTCTGAAAACAGTCACATCTCGGTTCTACCAACGCAGAAGGAGCTTGTT
AAAGACCCTGCGTTTATCTAGCACACGTTACAAATTACAGCCACTAAATT
ACATTCCTTTCCTTCTTCCCATTCTGCATCACCTTGAGTTATTTTTACAT
CCCTCAATATGCACTTTCCCCACCCTTTTTTTTTTTTAAAAACACACCAC
CAACACAGATATGACCATTGCCCCAGTCCTTCCGCGCCCCCTTCCTTTTC
CCACCCCCCCCTTAGCTGCGCCTTTTGCCGGATGTTTTTGTCACCAACCC
CCCAANAAAGAGGANGAGTTTGGACCTTTCGCTATAAACCCGAAGTTTTA
CATGATCGACAACCATTTATAAAACAACAAGCACACGCGAATAGTTACTC
CTCCCCCTTTTACTTACCCCGCGACTTTATTTCTTCTACTTCCTCCCTTT
TTATTTTTACCTTCTTTTCTCCCCTTTTTTTCCCTATTTTGAAAAACACC
ACTCTACCGTCGTATTATTTATTCTTGCTCGGTAATACTATGGTGTTTAT
ATTTGGGCGAAAAAATATTCTTATCATTTATAACATACTGATTTTCTTTT
CTCCCTCTCTCCCCTTCTTTTCTGGGTTTCCACTAATCACAAAATTGCTC
TGTATGATTTCATAATTACTCTACTCCTCTTTCTTCTTTTATT

Query= MSMg01no061_o09.b1 MSMg01no061_o09.b1 CHROMAT_FILE:
MSMg01no061_o09.b1 PHD_FILE: MSMg01no061_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:00 2005
         (676 letters)



>mm_chr1_183928058_183929136
          Length = 1079

 Score = 1203 bits (622), Expect = 0.0
 Identities = 662/676 (97%), Gaps = 3/676 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatcttattgccatagtctacaattaaggaaaaaaccctttgggttcaggaaa 63
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatcttaaggacatagtctacaattaaggaaaaaaccctttgggttcaggaaa 263

                                                                       
Query: 64  gcattattcattatacaaaaccactctacactatgtaaatagccacttagaaggaaatag 123
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acattattcattatacaaaaccactctacactatgtaaatagccacttagaaggaaatag 323

                                                                       
Query: 124 gtaatttacaatgaaacattcatctaataatttcctaaaagcataaaaaggggaaaatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 gtaatttacaatgaaacattcatctaataatttcctaaaagcataaaaaggggaaaacat 383

                                                                       
Query: 184 accaaatgatcaaagcaaaatgcatgcatacataatcacctgtacataaatcacaacata 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 accaaatgatcaaagcaaaatgcatgcattcataatcacctgtacataaatcacaacata 443

                                                                       
Query: 244 aggttgtctttaattggatctctgttagttcgaggccagtctggtctatacagcaagatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggttgtctttaattggatctctgttagttcgaggccagtctggtctatacagcaagatc 503

                                                                       
Query: 304 caggatggccaagactacacagagaaaccctattggggggcaggtgagcaacatgagaag 363
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 caggacggccaagactacacagagaaaccctattgggggacaggtgagcaacatgagaag 563

                                                                       
Query: 364 acttataaatccacaacagcaagagtcttgagttttgctgagtgcagtggtgcgtgccct 423
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acttataaatccagaagagcaagagtcttgagttttgctgagtgcagtggtgcgtgccct 623

                                                                       
Query: 424 tactcctaccactagggagacagaagcaggcagaactctgtgagttcgaggctaacctgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tactcctaccactagggagacagaagcaggcagaactctgtgagttcgaggctaacctgg 683

                                                                       
Query: 484 tttacacagtgagttacaggacacaagagctaaggagggagagaaaaaacagagaaacaa 543
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 684 tttacacagtgagttacaggacacaagagcgaaggagggagagaaaaaacagagaaacaa 743

                                                                       
Query: 544 atatgttcaaataaaaaaattaatatgaaaagattctgggctttcaagtagaaaatctat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atatgttcaaataaaaaaattaatatgaaaagattctgggctttcaagtagaaaatctat 803

                                                                       
Query: 604 cataatactgaaagggtgagaatcaaagggagaaaggtaaa-t--tgaaggaacagcagc 660
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 804 cataatactgaaagggtgagaatcaaagggagaaaggtaaactcctgaaggaacagcagc 863

                           
Query: 661 agggcctggcagctca 676
           ||||||||||||||||
Sbjct: 864 agggcctggcagctca 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1079
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1069
Effective search space:   711954
Effective search space used:   711954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)