BAC Information

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BAC

Clone NameMSMg01-061O21
Chromosome1 (Build37)
Map Location 56,890,394 - 56,890,616
singlet/doubletsinglet
Overlap geneSatb2
Upstream gene9130227L01Rik, Hsfy2
Downstream geneEG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061O21.T7 (MSMg01no061_o21.b1)MSMg01-061O21.TJ (MSMg01no061_o21.g1)
ACCAG288024AG288025
length707710
length of high quality
(start - end)
379 (75 - 453)223 (205 - 427)
definitionCHROMAT_FILE: MSMg01no061_o21.b1 PHD_FILE: MSMg01no061_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:02 2005CHROMAT_FILE: MSMg01no061_o21.g1 PHD_FILE: MSMg01no061_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCAGATGGTTCCCACATAAAGCATTTGTCCCTATGTTCTAGCATC
TTTGATCCAGGAAGGTGTTCTGCATGTTACCAAAAGAGAAATATATAAAT
ACCAAGCCAGCAACAAACTCTGATCTACAGTAGTGCCCTGCCTTCAAGAT
ATGTTAGTAGGAGCAACCAATCAATACCTGATTTTCCTTAAGATGCATTT
CACGAGATGGAACCAATACCCTATACAGCCTGGGTGAAAAAGAACCTGAA
AACAGATAGCCCAGGAACCTAGGGTTAAACTAAATACTACTAATATAAGA
CAATATCAACAACATAAATAGTGATAAAATGACTCCTAATGATGCTCTAC
TCTGCTCATAGATCAGTGCTGCTCTCAGTCATCATCAGAGAAGCTTCCTC
CCGACAGGAGTACGAAGGAAATACAGAGACCCACAGGCAGTCATGAGAGA
AGGAGAGAGAAACACAGAAAAAGCTTGGAACACAAAACCCTAAGGAAGAT
TTCTTCATCCTCTCAGAACTCAAGAAACCCTATGGAAGAAGAGGCAGACA
TTAAGGGAACAACGGAGGGCAATGAATCTCCGCCTTCTTAGTGCAGTAAG
CCTTTAAGACAGGTCGCATGTAGAGCTGATCCCCTGGCCATAAAATTGTT
TTTATTG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTTGTATAAAGAACCCCCG
AGAAAACACTTTGGAACCAGGAGATTTTTATTAGAATATAATTTATTTTC
TGGTGGTGATAAAAATTTATCTTCATTTTTTCGTGTGCATGGCGCTTGAA
GATTAACCATTACCTGTCTCTTGAGTTGTGGGGGGAAGGGCTATAGAAGT
ACTTGGAAAACACATTTGCAAGCAGGTGGTAAGATACCTTGTTTTCATTC
TTCCTAACTCTCTAACTCTCCCAAGCTCCCAGTTTATTGCAAGAAAAGAT
CAGGTCTGCGCAAATGTGGCCTCTCACTTGTAAAAACAAGGCAATGTTGT
GTTACAGATTAGTTTATAAATCCCCAGTGGCTTCACAAATCAGTGCGGAC
AGCTGATGAACACAGAACTGAGTTAATGTCTCATCTCGGAGCTGCAGCCA
ACAGTTGAAAGAAAAAATGGAATGAGTCAATTATTAACATGGAGGCCGCA
AAGAAAACACTACGCAATGAAAACAGCTGGTGTTAGTAGCTTGGCTAATG
CAACAGAGAAAAGCGGATCTTAGCATTTTTGTATAGAGAAAAAGGGAAGA
AAAAGAAGACAAGTAAACAAACAACAGCTTATGATAACAAATAGGAGTAT
TACAAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_o21.g1 MSMg01no061_o21.g1 CHROMAT_FILE:
MSMg01no061_o21.g1 PHD_FILE: MSMg01no061_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:02 2005
         (223 letters)



>mm_chr1_56890194_56890816
          Length = 623

 Score =  416 bits (215), Expect = e-121
 Identities = 221/223 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccattacctgtctcttgagttgtggggggaagggctatagaagtacttggaaaacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaccattacctgtctcttgagttgtggggggaagggctatagaagtacttggaaaacaca 364

                                                                       
Query: 61  tttgcaagcaggtggtaagataccttgttttcattcttcctaactctctaactctcccaa 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttgcaagcaagtggtaagataccttgttttcattcttcctaactctctaactctcccaa 304

                                                                       
Query: 121 gctcccagtttattgcaagaaaagatcaggtctgcgcaaatgtggcctctcacttgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gctcccagtttattgcaagaaaagatcaggtctgcgcaaatgtggcctctcacttgtaaa 244

                                                      
Query: 181 aacaaggcaatgttgtgttacagattagtttataaatccccag 223
           ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 243 aacaaggcagtgttgtgttacagattagtttataaatccccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)