BAC Information

Click to search

BAC

Clone NameMSMg01-061P08
Chromosome1 (Build37)
Map Location 103,853,575 - 103,853,882
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061P08.T7 (MSMg01no061_p08.b1)MSMg01-061P08.TJ (MSMg01no061_p08.g1)
ACCAG288046AG288047
length786772
length of high quality
(start - end)
162 (72 - 233)308 (71 - 378)
definitionCHROMAT_FILE: MSMg01no061_p08.b1 PHD_FILE: MSMg01no061_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:04 2005CHROMAT_FILE: MSMg01no061_p08.g1 PHD_FILE: MSMg01no061_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAGATCCGCGGAA
TTCTTTGTTCTTTTCTCGAGACCCATTTTTTAACGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCACT
ATCTGATTTATGATAGGTAAAGATCATTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCACAAGCTTTGGAGTTTCATG
ATGTCCCTTTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCTCGAATTTTTCCCCTGTGTCCATTTCTTCAAGGATTTTCCCCTCTT
TCTCCTCTATAAGTTCCAGTGCCTCCGCGTTTATTTGTAGTTCCTTGATC
CACTTATATATGACTCTTCCCCCATCTATTTATGACAGTTTCGTTTACTT
TTCTTCTATTTTAAAACTATCTTTTGTGTTATCACCTTTAGTTAGTTATG
TAGTTCTTTTTTCCTATAGAATATCTATATTTTTCTTTAAACAAAATCTT
TTTTCTATTTTTTCCTTTTTTTTATTATTATGCTTTTTTTTTTCTCTTCT
TTATAATCCCATATTTTTTTTCTTATTTTTTTGTGTCCCTATTTTATATG
CCATAAAAATCACATAATCTTTTTCATTTTACTCATATTTATTTCTCTAC
TTATACTTTTTCTTTATCTAATTCCTTTTAGTCCTTATATTCTTCTCTCC
TTCTTTCACTCACTTCTTTCATATTTATATTACTCT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACAGAAAGTCCATGGTACTCAGGCGATAGA
AGAAGAGACTAAAAAACTAGCCTTTGGGAAAAAATTCCTGTTGACATACT
GTCTTCATATTAGAAAAATCATCACACACATCTCCTCATGTATCTTTGAA
CAAAATTAGTGGTCTTTATGTATGAATGGAAGGTCTGTTATGTGAAAATG
CTAGGTGTCAAAAGGAGATATATTGACAGGTAGATAAAAGAGGCCTTTTG
AGATGCTAGTTTGATAAACATATGTACTTCAACATTTATTTTATATTTTG
TGTGTGTTTAGATATATGTGTCTGTGTGTGTGTGTGTATGCGTTTTTTTT
TCTTTTCTTTTCCCCCCCCCTCTCTTTTTTTCTCTTTTTCCCTTTTTTTT
CTCTTTTTCCCCTTTCTCCTCTTTTTTACCCCTTCTTCCCCCTTTCTCTT
CTCTTCTTCCTTTCCCCCTTTTTCTCCTCTTTTTTTTCTCTCTCCCTTCC
CTTCCCCTTTTTCCCCTTTTCCTTCTTTTTCTTCCTTTTTTCTCCCTTTC
CCCTTCTTTTCCCTCCCTTTTCTCTTCCTTTTTCTCCCTTTCTTCCCCTA
TTTTCCCTCCTTTTTTTTCTTCTCCTTTTCCTTCCCTTTTTTTTTCCCTC
CCTTTTTTTTCTCTCCCACCTTTTCCCCCCTTATTTCTCTCCTTTCTCTT
TCCACTATTCCGTCTCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_p08.g1 MSMg01no061_p08.g1 CHROMAT_FILE:
MSMg01no061_p08.g1 PHD_FILE: MSMg01no061_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:04 2005
         (308 letters)



>mm_chr1_103853375_103854082
          Length = 708

 Score =  526 bits (272), Expect = e-154
 Identities = 299/308 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaaagtccatggtactcaggcgatagaagaagagactaaaaaactagcctttgggaa 60
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 508 acagaaagtccatggtacttaggcaatagaagaagagactaaaaaactagcctatgggaa 449

                                                                       
Query: 61  aaaattcctgttgacatactgtcttcatattagaaaaatcatcacacacatctcctcatg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaaattcctgttgacatactgccttcatattagaaaaatcatcacacacatctcctcatg 389

                                                                       
Query: 121 tatctttgaacaaaattagtggtctttatgtatgaatggaaggtctgttatgtgaaaatg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 388 tatctttgaacaaaattagtggtcgttatgtatgaatggaaggtctgttatatgaaaaag 329

                                                                       
Query: 181 ctaggtgtcaaaaggagatatattgacaggtagataaaagaggccttttgagatgctagt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 328 ctaggtgtcaaaaggagatatattgacaggtaggtaaaagaggccttttgagatgctagt 269

                                                                       
Query: 241 ttgataaacatatgtacttcaacatttattttatattttgtgtgtgtttagatatatgtg 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 268 ttgataaacatatgtacttcaacatttattttgtattttgtgtgtgtttagatatatgtg 209

                   
Query: 301 tctgtgtg 308
           ||||||||
Sbjct: 208 tctgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)