Query= MSMg01no061_p11.b1 MSMg01no061_p11.b1 CHROMAT_FILE:
MSMg01no061_p11.b1 PHD_FILE: MSMg01no061_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:05 2005
(344 letters)
>mm_chr1_35482384_35483129
Length = 746
Score = 590 bits (305), Expect = e-173
Identities = 330/339 (97%), Gaps = 2/339 (0%)
Strand = Plus / Minus
Query: 1 cttcctcttttagcggttgtcccgttttattatgaaatattgtataacagatgagatttc 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttcctcttttagctgttgtcccgttttattatgaaatattgtataacagatgagatttc 480
Query: 61 atgtagaatcataaaataaacactaccagcactgggaagttttactatgttctcttagct 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 479 gcgtagaatcataaaataaacactaccagcgctgggaagttttactatgttctcttagct 420
Query: 121 tcaggtttttaaagaaatttaggcctataagaatattcatgtcgcatcccagaattaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcaggtttttaaagaaatttaggcctataagaatattcatgtcgcatcccagaattaggg 360
Query: 181 acccaggcatgcagtttatgccaaatgccaacaaacaacattctggctttctttttctct 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 359 acccaggcatgcagtttatgccaaatgccaacaaacaactttctggctttctttttctct 300
Query: 241 cttcatgctggaaatatagatcagtcatacaatacttgaattgatgaggccgattcagtc 300
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 299 cttcatgctggaaatatagatcagtcatacaatacttgaattgatgaggcagactcagtc 240
Query: 301 ccttccctgg--cacacacacacacaaatgtgtatgtgt 337
|||||||||| |||||||||||||||||||||||||||
Sbjct: 239 ccttccctggcacacacacacacacaaatgtgtatgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 746
Length adjustment: 9
Effective length of query: 335
Effective length of database: 737
Effective search space: 246895
Effective search space used: 246895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_p11.g1 MSMg01no061_p11.g1 CHROMAT_FILE:
MSMg01no061_p11.g1 PHD_FILE: MSMg01no061_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:05 2005
(540 letters)
>mm_chr1_35326957_35327891
Length = 935
Score = 565 bits (292), Expect = e-165
Identities = 471/594 (79%), Gaps = 105/594 (17%)
Strand = Plus / Plus
Query: 1 ctctttatggcagtcattgagctggcctcacatctggtctctagagtgtaagcaagctct 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ctctttatggcagtcattgagctggcc-----tctggtctctagagtgtaagcaagctct 255
Query: 61 caggctgctgtcatgctgggctgggtctctactaccactatcacaggggatacaaatcca 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cagactgctgtcatgctgggctgggtctctactaccactatcacaggggatacaaatcca 315
Query: 121 aatctggagaa----aatgtcccaataagaatgaatctcagccccttctctgacagaaga 176
|||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 316 tatctggagaaaattaatgtcccaataagaatgaacctcagccccttctctgatggaaga 375
Query: 177 catctaatatgactggctcaccatcaggcagctggctggccacccatagggaatggtgtc 236
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 376 catctaatatgactgactcaccatcaggaagctggctggccacccatagggaatggtgtc 435
Query: 237 atatcattggcagttcagttgggctctgctgctggcagacatagtcctcactgtagtcag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atatcattggcagttcagttgggctctgctgctggcagacatagtcctcactgtagtcag 495
Query: 297 gcc--------------------------------------------------------- 299
|||
Sbjct: 496 gccttgatagatggaagtccacgtggctgcacctgtacatatcctccatccaaaaccacc 555
Query: 300 ------actctgttcatgatgaatggtagggatgtctgtgggataaggcaaaggctgact 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atggccactctgttcatgatgaatggtagggatgtctgtgggataaggcaaaggctgact 615
Query: 354 ctcagtcatggaaccaatcgctttgtccaccttgatatatattcattccatgtatatata 413
|||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct: 616 ctcagtcatggaaccaatcgttttgtccaccttgatatatattcatt---t-tatatata 671
Query: 414 tatatatatatatatat------------atatatatatatatatatatacacacacata 461
|||| | | |||||||| |||| | | ||||||| |||| |
Sbjct: 672 tatacacacatatatatgtgtgtgtgtgtatatgtgtgtatatatgtata--------tg 723
Query: 462 tatatatacatatatatgt----atatatgtttatatatacacacacatatata 511
||||||| |||||||||| |||||| ||| |||||||||||||||||
Sbjct: 724 tatatatgtatatatatgtgtctatatat----ata-atacacacacatatata 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 935
Length adjustment: 10
Effective length of query: 530
Effective length of database: 925
Effective search space: 490250
Effective search space used: 490250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
