BAC Information

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BAC

Clone NameMSMg01-061P16
Chromosome1 (Build37)
Map Location 54,172,110 - 54,172,327
singlet/doubletsinglet
Overlap geneHecw2
Upstream gene1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061P16.T7 (MSMg01no061_p16.b1)MSMg01-061P16.TJ (MSMg01no061_p16.g1)
ACCAG288061AG288062
length837750
length of high quality
(start - end)
221 (47 - 267)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no061_p16.b1 PHD_FILE: MSMg01no061_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:06 2005CHROMAT_FILE: MSMg01no061_p16.g1 PHD_FILE: MSMg01no061_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCTGTATTACATTTAAAATTTTTGGAGAATTTCTGGTTTTTAA
AGATGCTTTTCTAAATTCTTTCAAATGTATTGGTCTATGCAATATTTTTA
ACTTTGAGGTTCTTTTTTTATTAAAAAATTAAGTTGTAATGGCATATACA
CACAAATAATGACTTTAAAGTTATTTTAAGTTTGTTTGTTATTGTTGTTG
TTAGTGAGTGTGTGTGACTACAACACAAAAACTCTATATATAACAAATAT
TACATATCACATAATATTTTTTTTTTTTCTAATATACACTTCCTCTCTCC
CCCCCTATATTTTTTTTCCTACCCCCCCTCTAAAAACTAAGTATATTAAA
TATTAATTTTTATTTTTTTACCACCCCATATAAACCACCCCGCTTATCAT
ATAAATACTAATTTAATTATCTCTCCTCCACCTTTTATATATTCTTACCT
AATAATACCTCAATTCTTTCAACTATTAAATATATTCCTCATTCCTCTTT
AAACATTATCCTTTTTTATATATCATCTTTTACACTTTATATCAATCTTT
CTATTTCACTCTTCTTCTTATATACACTCATACTACTCAATCAAAATCCA
ATATAATCCTTATTCATATATATCTCATTTTTCATTTTATTATCTCTAAC
TCTCTCTTCAATTCTTAATCCCATTTCCTCCTTCCTATTTCCTACACTAT
TTAAATCTACACACTACCCATCCCACTATATTATACAACCATACCAATAC
AAAATCATAACTCTTTATATCTCTACACTCTCACTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCATATTGGTTCCCTGAACTGTAGAGTGAGG
GCTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCTGCC
AAAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTGGAGGAATTGCAG
AAATTACTGCCACTATCAAGGACTTGAAAGATGCAGGGGTGGTGGTTCCC
ACCACATCTCCATTTAACTCTCCTATCTGGCCAGTGCATAAAACAGATGG
ATCATGGAGAATGACTGTTGTTTACCGAAAACTAAATCAGGTAGTAACTC
CAATTGCAGCTGCTGTACCAGATGTAGCTTCCTTACTTGATCAAATTAAC
ACATCTCCTGTCCCCCCCCATGCGGCTATTGATTTGTCACATGCCTTCTT
CTCTGTACCTGTCCATAAGGACCACCATAATCAACCTGCCTTCCGTTGTC
TAGTGCCATAGTATACCTTCTCAGTCTCGCCCTCATGGATATACCACCTC
TCCCGCTCTGCTTCTTATCCTTTTCACAACTTTACCCTGTTTCCCCTTGC
ATTCCCCCCTTCTCTATCCTTTTCGCCCTTCTACCTTGTTTTCCCTTCTT
TTTTTATTGCCTTTCCCTTCCATTTTATTTCCTCTCTACTTTCATCTTCA
CTTTCCTTCACTTTTCCTCTCCTTTCACTTCCTCTTTTCCGTTCCTCCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_p16.b1 MSMg01no061_p16.b1 CHROMAT_FILE:
MSMg01no061_p16.b1 PHD_FILE: MSMg01no061_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:06 2005
         (221 letters)



>mm_chr1_54171907_54172528
          Length = 622

 Score =  398 bits (206), Expect = e-115
 Identities = 215/218 (98%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatctgtattac-atttaaaatttttggagaatttctggtttttaaagatgctt 62
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaattcatctgtaaaactatttaaaatttttggagaatttctggtttttaaagatgctt 362

                                                                       
Query: 63  ttctaaattctttcaaatgtattggtctatgcaatatttttaactttgaggttctttttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttctaaattctttcaaatgtattggtctatgcaatatttttaactttgaggttctttttt 302

                                                                       
Query: 123 tattaaaaaattaagttgtaatggcatatacacacaaataatgactttaaagttatttta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tattaaaaaattaagttgtaatggcatatacacacaaataatgactttaaagttatttta 242

                                                 
Query: 183 agtttgtttgttattgttgttgttagtgagtgtgtgtg 220
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtttgtttgttattgttgttgttagtgagtgtgtgtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 622
Length adjustment: 9
Effective length of query: 212
Effective length of database: 613
Effective search space:   129956
Effective search space used:   129956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)