Query= MSMg01no061_p19.b1 MSMg01no061_p19.b1 CHROMAT_FILE:
MSMg01no061_p19.b1 PHD_FILE: MSMg01no061_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:06 2005
(616 letters)
>mm_chr1_105229067_105230082
Length = 1016
Score = 1114 bits (576), Expect = 0.0
Identities = 603/612 (98%)
Strand = Plus / Plus
Query: 5 gaattcctcctctatatgtccttgtgttttcttttcaagacattcttatattccctgtat 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcctcaatatgtccttgtgttttcttttcaagacattcttatattccctgtat 264
Query: 65 tagatgttacacttgaccctatagaaatttacattttagaaacccgaatgaatcccagag 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagatgttacacttgaccctatagaaatttacattttagaaacccgaatgaatcccagaa 324
Query: 125 acaaggagatgcaaaggttgtgtgggtctcaggtgtgcagagtggcttctaaggcaaact 184
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 325 acaaggagatgcaaaggttgtgtggttctcaggtgtgcagagtggcttctaaggcagact 384
Query: 185 ctcaggaaaacatcctaatactaaaagctcttttgttaaagattaatcctagaagacaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaggaaaacatcctaatactaaaagctcttttgttaaagattaatcctagaagacaat 444
Query: 245 cactgaaatgtccatgtttttgtgtcctgaaactaagagctggaccaggggacatggtag 304
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 445 cactgaaatgtccatgtttttgtgtcctgaaacaaagagctggaccagcggacatggtag 504
Query: 305 tggtggaaatagacagcttattaaacacaaaggcagtcatgaacatggtagttcacaagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggtggaaatagacagcttattaaacacaaaggcagtcatgaacatggtagttcacaagt 564
Query: 365 ggaccacgccaggctcaagatcatttgcaaaattatgttccctttctcaagaacttattt 424
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaccaggccaggctcaagatcatttgcaaaattatgttccctttctcaagaacttattt 624
Query: 425 tgtacttactatattttaaaaactggtagcctccaggggaggagtttgtctgttaacttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtacttactatattttaaaaactggtagcctccaggggaggagtttgtctgttaacttg 684
Query: 485 ctttttaatatgctaatcttcattccctccctattacccctgccaacccaccacattttt 544
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 ctttttaatatactaatcttcattccctctctattacccctgccaacccaccacattttt 744
Query: 545 ttaagttccccacatgctgtcagtagtctctagtccagtaatactttatttagaatgtgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaagttccccacatgctgtcagtagtctctagtccagtaatactttatttagaatgtgt 804
Query: 605 gttacttctgcc 616
||||||||||||
Sbjct: 805 gttacttctgcc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_p19.g1 MSMg01no061_p19.g1 CHROMAT_FILE:
MSMg01no061_p19.g1 PHD_FILE: MSMg01no061_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:07 2005
(639 letters)
>mm_chr1_105340474_105341519
Length = 1046
Score = 601 bits (311), Expect = e-176
Identities = 339/355 (95%), Gaps = 13/355 (3%)
Strand = Plus / Minus
Query: 298 tgcagtcctagagagtaccttataatctgcacacagttagctcgaggagccttcacacag 357
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 tgcagtcctagagagtacctcataatctgcacacagttagctcgaggagccttcacacag 987
Query: 358 tttatctgaaggcttctctgtaatccttagagcatatataaacttgaagctatgtgggtc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 tttatctgaaggcttctctgtaatccttagagcatatataaacttgaagctatgtgggtc 927
Query: 418 tagtgaatgctgtcactttcagaaacttcctgaaactattcagatgttttcttcctgaga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 tagtgaatgctgtcactttcagaaacttcctgaaactattcagatgttttcttcctgaga 867
Query: 478 ttaaggatcttcccacaggataaatgtttgcctccccttagaatatctcggtattttatg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ttaaggatcttcccacaggataaatgtttgcctccccttagaatatctcggtattttatg 807
Query: 538 ttacca-ccccccgacacacaccaa------ccaccatccctttctattgctgtacatcc 590
|||||| |||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 806 ttaccaccccccccacacacaccaatcacccccaccatccctttctattgctgtacatcc 747
Query: 591 agctccaactctggtggacttcttttgctcaagagtagt------caatcagaag 639
||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 746 agctccaactctggtggacttcttttgctcaagagcagtctatgccaatcagaag 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1046
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1036
Effective search space: 651644
Effective search space used: 651644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
