Query= MSMg01no062_a05.b1 MSMg01no062_a05.b1 CHROMAT_FILE:
MSMg01no062_a05.b1 PHD_FILE: MSMg01no062_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:09 2005
(759 letters)
>mm_chr1_183301139_183302298
Length = 1160
Score = 1377 bits (712), Expect = 0.0
Identities = 748/760 (98%), Gaps = 1/760 (0%)
Strand = Plus / Plus
Query: 1 tgcttgcaagtgtgggtgaccagaaatgccaaccttcactgcctggtcactacctcttgt 60
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 201 tgcttgcaagtgtgggtgaccagaaatgccaacattcactgcctggtcactagctcttgt 260
Query: 61 cttttagcttctcaacttactctagaaaaacaagcatctctctaaaaccagagctgctat 120
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cttttagcttctcaacttactcaagaaaaccaagcatctctctaaaaccagagctgctat 320
Query: 121 cttgttgtcacagatccttgaatgtcttgccttcctgtgagctgggggcaaagaccttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgttgtcacagatccttgaatgtcttgccttcctgtgagctgggggcaaagaccttta 380
Query: 181 gctccattttcagcttgatgaggccgtctgtggtctggctagcaggattgagtcactggg 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gctccattttcagcttgatgaggccgtctgtggtctggctagcaggactgagtcactggg 440
Query: 241 ctgacaactctgaatgtgttccacccccaggtgatgactgtccaccagcctttagcaaag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgacagctctgaatgtgttccacccccaggtgatgactgtccaccagcctttagcaaag 500
Query: 301 ggcctgccttctcatcaccagcacttctgaggccctggaggcagcagcgtgcttttatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcctgccttctcatcaccagcacttctgaggccctggaggcagcagcgtgcttttatat 560
Query: 361 caggcatgggcatcgttccccacccctgcagctccacaacggtacctgagcaaagcacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggcatgggcatcgttccccacccctgcagctccacaacggtacctgagcaaagcacca 620
Query: 421 agctacctagacagaaggaacagctgtaagtgcgaatcaagagtaagaaaaaa-gagtcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 agctacctagacagaaggaacagctgtaagtgcgaatcaagagtaagaaaaaaagagtcc 680
Query: 480 ccaagcttagggagaccggcttaacataaggaactgagtccgatccccacatcatacata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaagcttagggagaccggcttaacataaggaactgagtccgatccccacatcatacata 740
Query: 540 aagaagctaggtatggtggcaaatgcttgcaaccccagagcagcagaggcagaggcaagc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagaagctaggtatggtggcaaatgcttgcaaccccagagcagcagaggcagaggcaagc 800
Query: 600 agatcccttgagcgtgttcaccagccagcctagcctagttggtgagccccaggctaggga 659
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agatccctcgagcgtgttcaccagccagcctagcctagttggtgagccccaggctaggga 860
Query: 660 gagatcctgtttcaaaagctttggatggtgcctgggcaatggcccctgaggttgatgtcc 719
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gagaccctgtttcaaaagctttggatggtgcctgggcaatggcccctgaggttgatgtcc 920
Query: 720 tccacattcctctgcacacactgagtggttcttcctttta 759
|||||| ||||||||||||||||| || ||||||||||||
Sbjct: 921 tccacactcctctgcacacactgaatgattcttcctttta 960
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 759
Length of database: 1160
Length adjustment: 10
Effective length of query: 749
Effective length of database: 1150
Effective search space: 861350
Effective search space used: 861350
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_a05.g1 MSMg01no062_a05.g1 CHROMAT_FILE:
MSMg01no062_a05.g1 PHD_FILE: MSMg01no062_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:09 2005
(621 letters)
>mm_chr1_183464196_183465213
Length = 1018
Score = 1131 bits (585), Expect = 0.0
Identities = 611/623 (98%), Gaps = 9/623 (1%)
Strand = Plus / Minus
Query: 1 tcctatgtgaaataaaaaaggagggtgggt---gccctaagcagggagaggggacccacc 57
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 817 tcctatgtgaaataaaaaaggagggtgggtgggg----aagcagggagaggggacccacc 762
Query: 58 agaggggacattaccatggttagtaactggatccacgcgatggcgtcctggagcagtcat 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agaggggacattaccatggttagtaactggatccacgcgatggcgtcctggagcagtcat 702
Query: 118 gggtgagaagcatgtgggcacatttataatttgcagggaacactggtaaccctgtcagtt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gggtgagaagcatgtgggcacatttataatttgcagggaacactggtaaccctgtcagtt 642
Query: 178 gactccgtgtgcataaatactgttttggataaggatgggggagaaaagctgtctgtagtc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gactccgtgtgcataaatactgttttggataaggatgggggagaaaagctgtctgtagtc 582
Query: 238 ctgaggagttcttctacatcattggtcagttctccatatggaagataaatgttcgcttca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctgaggagttcttctacatcattggtcagttctccatatggaagataaatgttcgcttca 522
Query: 298 acagctttgagtttgaaatagtactgagttttgacccaggaaagactagaagaacatcaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acagctttgagtttgaaatagtactgagttttgacccaggaaagactagaagaacatcaa 462
Query: 358 gagcccacggacctgaatgtcgggccctgacccctgccaaagggcagcacaagttctctc 417
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 461 gagcccacggacctggatgtcgggccctgatccctgccaaagggcagcacaagttctctc 402
Query: 418 taggtaaaccagcctcactgaaatcacggccgttcacaatacacaaatgtgtcttttact 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 taggt-aaccagcctcactgaaatcacggccgttcacaatacacaaatgtgtcttttact 343
Query: 478 cttctgttctttcctattctgtctgtggcttctgcttctgcgaggaagggccacacatat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cttctgttctttcctattctgtctgtggcttctgcttctgcgaggaagggccacacatat 283
Query: 538 gaacaggtgaaccgcctagacactataaatgatctttggtccagccccatgatagccttg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 282 gaacaggtgaaccgcctagacactataaatgatctttggtccagccccatgatggccttg 223
Query: 598 gatttattactttcgacccttgg 620
|||||||||| ||||||||||||
Sbjct: 222 gatttattac-ttcgacccttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1018
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1008
Effective search space: 615888
Effective search space used: 615888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
