BAC Information

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BAC

Clone NameMSMg01-062D16
Chromosome1 (Build37)
Map Location 177,362,294 - 177,362,992
singlet/doubletsinglet
Overlap geneRgs7
Upstream geneOlfr220, Fmn2, Grem2
Downstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062D16.T7 (MSMg01no062_d16.b1)MSMg01-062D16.TJ (MSMg01no062_d16.g1)
ACCAG288252AG288253
length1,1601,149
length of high quality
(start - end)
698 (139 - 836)699 (127 - 825)
definitionCHROMAT_FILE: MSMg01no062_d16.b1 PHD_FILE: MSMg01no062_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:36 2005CHROMAT_FILE: MSMg01no062_d16.g1 PHD_FILE: MSMg01no062_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGCTTCTTTTTNNAGTCATTCGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTGATCTTTCAAAACCTTTTAAAATCCTGGGNGNNGG
ATCTTGTCAAATGCTTCCTTTAAATCTACCGAGATGACCATGTGGTTTTT
GTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATAT
TAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATG
ATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGAT
TTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTG
TTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAAT
TTGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAG
AACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACC
CATCTGGTCCTGGGCTTTTTTTGGATGGGAGACTATTAATAACTGCTTCT
ATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATT
CAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGT
TTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTT
TGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCAGTTCTGATTTT
TGTTAATTAGGATTTTGTCCCTGTGCCCTTTAGTGAGTCTAGCTAAGGGT
TTATCTATCTTGTTGATTTTCTCAAAGAACCAACTCCTCGTTTGGTTAAT
TCTTTGAATAGTTCTTCTTGTTTCCACTTGGTTGATTTCACCCCTGAGTT
TGATTATTCCCTGCCGTCTTACTCCTCTTGGTTGAATTTGCTTCCTTTTT
TTCTAGGGCTTTTAAATGCGTTGTCAAGCTGTCTAGAATGTGCTTTTTCC
CGTTTTTTTCTTGTAAGTACTCTTAAGTTTATAATTTTCCCCTCTTATAA
AAGGCTTTTTTTGTGTTCCCAATAGTTTTTGTGTACGTTTTTGGTTTTTC
TTTTTCTTATAACCTCTCAAAGAAACCTTTAAACTCTTTTCTCATTTCCT
TCTCTCTCGC
CGGCTCTTTTTTNNACAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCATAAAAGCACCCCTGCTGGACT
TTCCAGACTTCCCACACCTTCCAAGAAAACCTTTCGCGATGAGAAATAAG
AAGCCTCCTGGTCCCTTCCCTGAGACAAAGAACTCTGAACTAGGCACAGG
AGAGGGAACTTCAGAGATTGTGGGGACCAGAGACATTTGGCCCTCGTGTA
ACCGTGCTAATTCTCTAAGGTCACGCTCTGTTTGGTAAGCTGTTGTGCAG
GTCTGGAGTCAAATCCCAAATCTTCTTGTCAGTAGCCGTGTGATCCTTTA
CTGGCACTGTGGTGTCCCGCTCCTAGCTTAGGTGTCACGCACGCATGACA
CAGTCTAGTCCCTCCATGTAATGAAATTCCAACCACCTGGCCACAGAGCA
TATATAATCTCTCAGTGATAATTTCTTCTGTCTTGGCAAAACTCTACAAT
TGCTCTCGCAGATTTTCTTCGCTACTTTTCATAAATTTATCCATCTATAA
AATGTAATTGATAAGAAACCAAGTGCCTTTACTAGTTAATCGATGTGCAG
CTTTCTAGGTGAGGTTCTTTTTAAAATAGTTTGACTGATATCATAGATCT
TGATTTTTCTATATTAAAATATGAAACAAAAGAAAACATGACCACTGTAT
TATGTTTGAGCCTGGTACTTATTTTTTTTTTGTACAGGGTGGTAGACCTG
TTTCCTGACAGTGCACAGGCCATTTGCCTAGTTCAACTCTCATGTGTATG
AATGGAAATTAAACAATCGGGAGGATTTTCCTTTATTAAAGGTCATTATA
AAACACAAGGCTTTGTGAGTTACAGAAAAATGAGATGTGGGAACCCAGGG
ACAGAGCTTCGAGTGTCACACACTTCTGCAAAGACCCCCTTGTCCCTTAT
CTTTCCTGCCTGGAGAAAGAGTAATACCTTCTGAAAACCATTAAGTTAAT
GGGTAAAGCTGGTTTCCTTTACGCTGAAACTCCTGGAATGCATTGTGGGC
GTCCTCCCCACTAAACCAGTTTAAAAAGGCTCTCCCTTTCTTCAGGGGTC
CGAAAGGTCCCTATTTTTAAGGGCTGTAAACCCACTGTGGGCCTCTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_d16.g1 MSMg01no062_d16.g1 CHROMAT_FILE:
MSMg01no062_d16.g1 PHD_FILE: MSMg01no062_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:36 2005
         (699 letters)



>mm_chr1_177362094_177363192
          Length = 1099

 Score = 1336 bits (691), Expect = 0.0
 Identities = 697/699 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacctttcgcgatgagaaataagaagcctcctggtcccttccctgagacaaagaactct 60
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 aaaccttttgtgatgagaaataagaagcctcctggtcccttccctgagacaaagaactct 840

                                                                       
Query: 61  gaactaggcacaggagagggaacttcagagattgtggggaccagagacatttggccctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gaactaggcacaggagagggaacttcagagattgtggggaccagagacatttggccctcg 780

                                                                       
Query: 121 tgtaaccgtgctaattctctaaggtcacgctctgtttggtaagctgttgtgcaggtctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tgtaaccgtgctaattctctaaggtcacgctctgtttggtaagctgttgtgcaggtctgg 720

                                                                       
Query: 181 agtcaaatcccaaatcttcttgtcagtagccgtgtgatcctttactggcactgtggtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agtcaaatcccaaatcttcttgtcagtagccgtgtgatcctttactggcactgtggtgtc 660

                                                                       
Query: 241 ccgctcctagcttaggtgtcacgcacgcatgacacagtctagtccctccatgtaatgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ccgctcctagcttaggtgtcacgcacgcatgacacagtctagtccctccatgtaatgaaa 600

                                                                       
Query: 301 ttccaaccacctggccacagagcatatataatctctcagtgataatttcttctgtcttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttccaaccacctggccacagagcatatataatctctcagtgataatttcttctgtcttgg 540

                                                                       
Query: 361 caaaactctacaattgctctcgcagattttcttcgctacttttcataaatttatccatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 caaaactctacaattgctctcgcagattttcttcgctacttttcataaatttatccatct 480

                                                                       
Query: 421 ataaaatgtaattgataagaaaccaagtgcctttactagttaatcgatgtgcagctttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ataaaatgtaattgataagaaaccaagtgcctttactagttaatcgatgtgcagctttct 420

                                                                       
Query: 481 aggtgaggttctttttaaaatagtttgactgatatcatagatcttgatttttctatatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aggtgaggttctttttaaaatagtttgactgatatcatagatcttgatttttctatatta 360

                                                                       
Query: 541 aaatatgaaacaaaagaaaacatgaccactgtattatgtttgagcctggtacttattttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaatatgaaacaaaagaaaacatgaccactgtattatgtttgagcctggtacttattttt 300

                                                                       
Query: 601 tttttgtacagggtggtagacctgtttcctgacagtgcacaggccatttgcctagttcaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tttttgtacagggtggtagacctgtttcctgacagtgcacaggccatttgcctagttcaa 240

                                                  
Query: 661 ctctcatgtgtatgaatggaaattaaacaatcgggagga 699
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctctcatgtgtatgaatggaaattaaacaatcgggagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)