Query= MSMg01no062_d22.b1 MSMg01no062_d22.b1 CHROMAT_FILE:
MSMg01no062_d22.b1 PHD_FILE: MSMg01no062_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:38 2005
(692 letters)
>mm_chr1_22365032_22366127
Length = 1096
Score = 1278 bits (661), Expect = 0.0
Identities = 686/697 (98%), Gaps = 6/697 (0%)
Strand = Plus / Minus
Query: 1 tctgtgaaatgcatttccatgcttttccctgtgatgttatttggactcaaaggcctggga 60
|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 896 tctgtgaaatgcatctccatgcttttccatgtgatgttatttggacttaaaggcctggga 837
Query: 61 tgggtaaaagctgtaactggaggacagagtcccacttagactgtcgtttataaacggact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tgggtaaaagctgtaactggaggacagagtcccacttagactgtcgtttataaacggact 777
Query: 121 ctgtttctataatcctggagcacccgtcaagagcttggtgatgcttggtagagatagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ctgtttctataatcctggagcacccgtcaagagcttggtgatgcttggtagagatagcta 717
Query: 181 cactgtttattactaccagcttctaaaaacagtgaccctataattagaaccttcctgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cactgtttattactaccagcttctaaaaacagtgaccctataattagaaccttcctgctg 657
Query: 241 accacgatttcttaccctgcaggatgactgaataaattccacctgagggcatttcattct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 accacgatttcttaccctgcaggatgactgaataaattccacctgagggcatttcattct 597
Query: 301 tcacagtataatatatgtgttttggctaaattattaaagaggacatttaacaaattatgc 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcacagtataataaatgtgttttggctaaattattaaagaggacatttaacaaattatgc 537
Query: 361 tagac-----aaaaaaaaaacagagcttatttcaaaggttaacacgtttttaaaaatcag 415
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tagacaaaaaaaaaaaaaaacagagcttatttcaaaggttaacacgtttttaaaaatcag 477
Query: 416 taaagataaagtctttcatttccttcagttaatgtgggggaaattatttggtaattgcta 475
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 476 taaagataaagtctttcatttccttcagttaatgt-ggggtaattatttggtaattgcta 418
Query: 476 catatcctagtatggtaacatatagtgggacattcttatacacttttctggaagagcaaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 catatcctagtatggtaacatatagtgggacattcttatacacttttctggaagagcaaa 358
Query: 536 tatatctattcacacagactgggaaagtgatgatgtatagaaagagagatttcattaatt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tatatctattcacacagactgggaaagtgatgatgtatagaaagagagatttcattaatt 298
Query: 596 aaaactagcaacgttacctttttttgctcacaaaccttcataaaactgtcccactattgc 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaaactagcaacgttacctttttttgctcacaaaccttcataaaactgtcccactattgc 238
Query: 656 cagcaatttgttccagttgataaaatagtgaaagagc 692
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 cagcaatttgttccagttgataaaatagtgaaagagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1096
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1086
Effective search space: 740652
Effective search space used: 740652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_d22.g1 MSMg01no062_d22.g1 CHROMAT_FILE:
MSMg01no062_d22.g1 PHD_FILE: MSMg01no062_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:38 2005
(648 letters)
>mm_chr1_22227303_22228350
Length = 1048
Score = 1226 bits (634), Expect = 0.0
Identities = 647/656 (98%), Gaps = 8/656 (1%)
Strand = Plus / Plus
Query: 1 atatagattttaaggatgttaatttggtatgccagaggggagtgcttgctagccacagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atatagattttaaggatgttaatttggtatgccagaggggagtgcttgctagccacagga 252
Query: 61 aggatttgaagtacccaacctttgagctagccaagacatataaaattaactgc------- 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aggatttgaagtacccaacctttgagctagccaagacatataaaattaactgctgtgtgt 312
Query: 114 -tgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgttggtctgtctct 172
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 313 gtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgttggtctgtctct 372
Query: 173 cattcttaaattcgtgtagctcctggacaggtgcgtgtgtgtgaatagttgggaacccag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cattcttaaattcgtgtagctcctggacaggtgcgtgtgtgtgaatagttgggaacccag 432
Query: 233 gacaggttaactactgcaacagattaggatctctgagaatcactaagaatgtccaatcaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gacaggttaactactgcaacagattaggatctctgagaatcactaagaatgtccaatcaa 492
Query: 293 aatatgttggttactttaaatacattaaagtaaaagaaccaattaccatgaagcacatta 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatatgttggttactttaaatacattaaagtaaaagaaccaattaccatgaagcacatta 552
Query: 353 tctaaacattttttggtaaattgccagctatgagtttaaataggcctggcagccatcttt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctaaacattttttggtaaattgccagctatgagtttaaataggcctggcagccatcttt 612
Query: 413 cagtaactcaccaaaatgacaaacacaaatggaagctgggatgtgggtacattcacatat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cagtaactcaccaaaatgacaaacacaaatggaagctgggatgtgggtacattcacatat 672
Query: 473 tctctaggccttttaggaaacatggactagttcctttggccttatacatgttaatctaca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tctctaggccttttaggaaacatggactagttcctttggccttatacatgttaatctaca 732
Query: 533 agaggggtgagattgtggacatcaagaaaattcacactcttcaaaaaggaataccagagc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agaggggtgagattgtggacatcaagaaaattcacactcttcaaaaaggaataccagagc 792
Query: 593 aaaaccagaagtatctacaatgtcacccagcatgccatgggcatcactgtaaacta 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aaaaccagaagtatctacaatgtcacccagcatgccatgggcatcactgtaaacta 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
