Query= MSMg01no062_e16.b1 MSMg01no062_e16.b1 CHROMAT_FILE:
MSMg01no062_e16.b1 PHD_FILE: MSMg01no062_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:43 2005
(713 letters)
>mm_chr1_57014293_57015404
Length = 1112
Score = 946 bits (489), Expect = 0.0
Identities = 510/519 (98%), Gaps = 5/519 (0%)
Strand = Plus / Minus
Query: 1 cttgctaaaatacttcagcgtgaggtttacgtttgacttcagaaa--cccacagaattta 58
||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||
Sbjct: 516 cttgctaaaatacttcagcgtgaggtttagggttgacttcagaaaag---aaagaattta 460
Query: 59 taaatctagtagtctaggggaagtgaaatctttttgaggtgtacatatctggaattatcc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 taaatctagtagtctaggggaagtgaaatctttttgaggtgtacatatctggaattatcc 400
Query: 119 ccagtttaacattctttgcttggagggaaatagaatttcattattttgtttagggcaagg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccagtttaacattctttgcttggagggaaatagaatttcattattttgtttagggcaagg 340
Query: 179 acatcttactttttaatccaggaaacatatcatcttagactttagatatatttcggttaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acatcttactttttaatccaggaaacatatcatcttagactttagatatatttcggttaa 280
Query: 239 aacaaaagaaatcacattcctcttttgattgagtggcagcctttgattgaccatagtaag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aacaaaagaaatcacattcctcttttgattgagtggcagcctttgattgaccatagtaag 220
Query: 299 ggtgaaaatagtattttctagctggatgtggtagcttatgctgtaatcctagaacttgga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggtgaaaatagtattttctagctggatgtggtagcttatgctgtaatcctagaacttgga 160
Query: 359 aggcagaggcaggaagattacttaaggtttttctttttcagggaggagtactgggggact 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 159 aggcagaggcaggaagattacttaaggtttttctttttcagggaggagcactgggggact 100
Query: 419 agcctggtctacctagtaaataccagggcatccagggttagagggtgagaaacatatctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agcctggtctacctagtaaataccagggcatccagggttagagggtgagaaacatatctc 40
Query: 479 agaaaaacaaagcaacaagattttcagtgggtttcatag 517
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 agaaaaacaaagcaacaagattttcagtgggtttcatag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1112
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1102
Effective search space: 774706
Effective search space used: 774706
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_e16.g1 MSMg01no062_e16.g1 CHROMAT_FILE:
MSMg01no062_e16.g1 PHD_FILE: MSMg01no062_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:44 2005
(632 letters)
>mm_chr1_56850534_56851570
Length = 1037
Score = 1197 bits (619), Expect = 0.0
Identities = 631/637 (99%), Gaps = 5/637 (0%)
Strand = Plus / Plus
Query: 1 atttttcttagattctccaggtcttgttccacctgaagatttaatgtgggaaagggggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttcttagattctccaggtcttgttccacctgaagatttaatgtgggaaagggggac 260
Query: 61 tattgtccagtaaactatttgacaaacaaagtcagatttattgaatgcgttttatttaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattgtccagtaaactatttgacaaacaaagtcagatttattgaatgcgttttatttaac 320
Query: 121 aaccaaaaaattctaacagcctaacaatgcacataagttaaaaattatcacttagtgata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaaaaaattctaacagcctaacaatgcacataagttaaaaattatcacttagtgata 380
Query: 181 acaaagatagttgatttacatggaaaaaggaacatttacaatatgttaatccttattcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaagatagttgatttacatggaaaaaggaacatttacaatatgttaatccttattcac 440
Query: 241 attattgatactgcaataaaacacaatttgtttttttcttcatttcacaaaaaaaaaaa- 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attattgatactgcaataaaacacaatttgtttttttcttcatttcacaaaaaaaaaaaa 500
Query: 300 ---ggcgggaaattgtgctttgtcaagaggcactacaagagaaagtttcttcttccaaat 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggcgggaaattgtgctttgtcaagaggcactacaagagaaagtttcttcttccaaat 560
Query: 357 agatattatatgacagatattgaataaatagacatatatgcattgtaattcgcaaagatc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatattatatgacagatattgaataaatagacatatatgcattgtaattcgcaaagatc 620
Query: 417 tggcaagaccacaggctaaaatgcccacagattcacttagaaccactgcaaacttggcag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcaagaccacaggctaaaatgcccacagattcacttagaaccactgcaaacttggcag 680
Query: 477 tgaaatcaaaaaataaaaggcaagacttagcattgaaaaatacctaataaatttttggtt 536
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaattaaaaaataaaaggcaagacttagcattgaaaaatacctaataaatttttggtt 740
Query: 537 gaagtgtaaaagataccaaatgcggatgccatcgatcgatgaaccacctgtaagagcttg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagtgtaaaagataccaaatgcggatgccatcgatcgatgaaccacctgtaagagcttg 800
Query: 597 gcaaaaaa-tcggtgtctaggatgtgtacagagtgac 632
|||||||| ||||||||||||||||||||||||||||
Sbjct: 801 gcaaaaaaatcggtgtctaggatgtgtacagagtgac 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1037
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1027
Effective search space: 638794
Effective search space used: 638794
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
