BAC Information

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BAC

Clone NameMSMg01-062F02
Chromosome1 (Build37)
Map Location 17,595,550 - 17,596,214
singlet/doubletsinglet
Overlap genePi15
Upstream geneUbe2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1
Downstream geneCrispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062F02.T7 (MSMg01no062_f02.b1)MSMg01-062F02.TJ (MSMg01no062_f02.g1)
ACCAG288320AG288321
length1,1501,163
length of high quality
(start - end)
665 (140 - 804)259 (129 - 387)
definitionCHROMAT_FILE: MSMg01no062_f02.b1 PHD_FILE: MSMg01no062_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:47 2005CHROMAT_FILE: MSMg01no062_f02.g1 PHD_FILE: MSMg01no062_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTTCTNNNNNNNATCATCTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTACTCAAAATGACCCTTTTAACTACCACAGAGCAGG
GCAAAGGACCAGAGGAAGCATTAAACTGACACGTTCCCAGAGAAATAGCC
TCACTTTTTTGATTCTATAGTTCAATCCATCATTAGAACTTCTTTGAGTG
GGCCCCTTGTGATGGCATTCAGTGGCAGGCATACATTAACAAGTAGCTTA
TATGTTAGAGCAGGTACACCGAGTGACTCAACATTTGAAGTTCTGTGAAA
ATTATGGATCTCAGTGGAACACTGTTACCTTTACTGTAACTGACACAACA
CTTATTTGAATTGGCATCAACTGAAAAGCTAGATCAGTTCCTAACCTGTA
CAGTGTATCCCAGATAGTCTGGGCATGCTCATTACACTATGTAACAAATA
TTTGGGCTCTGAGTCACCAGCTGTATGTTCAAATTATACTCTCCAGTGTC
CTGTTACTCTGGGGAGCTTCGCATGAACTTAGACCCAGGACTTTCTCTAA
TTGATCTAGACTGCCTGTAGTTCCAATATTCTACAATGCTCTGAACCTTT
TGTACAGCGCCCCCCTCCTCACTGAACCCCTTGTACATGGTCTTCTCCTT
CAGGTTCATTTATCCTATTCTTCAAGATTTTTGTATTAGAATAGCAGTTC
CTTTAATGATTTTCATATGCACAGCCATGTGCACCTCACCCATCATTTGA
ACTGCTATTCCGTCTCACTCCCTCCACGTCTATTGTATTGTCCTCATCAT
AACCAAACTTGACAGATAGTCCTCTGTGCACTTATTGCTAACTCTCTAAC
TCTAGGGCTACTGGCTGCTAAGGTAATTATTATTCTTCTTTGTCCCTGTG
TTGCTTGAAAGTCTTTGTGTTATAACAGCGATCTCCCCTTCCTTTTTGCA
TTTTCACGAAACACCAGGGACTTGGGCTTTTTATACTGCACCGCATTTTT
GAATAGTTTTATCCTTTCTTCCCCCTTCACTTTGGATAAACCCAAATAAT
TTTATAATTATTCTTTTAGAAACCCTTAAGGCTTTTCTCAGGATCCTTTA
TTTCTTAATATAAGTTGCTTCTTCTCCTCCAAATACTTATTCTAATATTT

TTTTCCTCATGGTAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCATTAAGCTGCCCCTGTAAACATGATCATCATA
GCTAGGCCATTTGTCAGTTCTAACCCCGAACCTATTTGAATTGATTTTCT
AGTAATCTTTGTTGTCAAAGTGATTCCTACTAAATATTCATGTTTACATC
TATAGATTTGTGCTGCTCTCAACCTTGGTCAGGGAAGTTTCCCATTGAGG
TGGGCAACACTTATCACAAAGATGTAACTGTTCATGGTAAGGGGTGCTAG
GAATAAGTGATTGAAAGTGTTAAGCTGTAAAAGAAATCTGTTTTCAGTCC
TGGCCCAGCCACCCAAGGCTTAGGGCAGATTGTGGAGGATATTATGAGAA
GAATTTAATAACCAGAGGATGGGGAGGAGTGAGGTGACATGCTGACCTCT
GCACGTGACCTCTTGCTGCACATGTGACCTCATAGCAGCTGTATAACCTG
AACAACATGAGTACAAGACAGTCAAAAGTCTCAGCATGGATGGGACTTAA
TTTTTCAATTTAAAAACCCATTTTCTCAGGTGATGGCTATTAAGGGAGGG
AAAGTTACTCTTCTTGGTGCTTGGGAGGATTAGTAGACTGCCCATACCCA
TCACCTCATACCTCTTCATATATAGGAAGTGCTAACTGAATTTAGTTGGT
TTTATAAAACAGAGATATGAAACTGATAAGGAGCTGTGTTGTCAAAAGTT
TCCTTCAGGTAGTCGGAGGCAGGTATTGATGCATATTTTTTGACCAAATT
GAATTGTGAACATATTTGAAATTTTTCCTATACTTTTACTTTTTAAAAAA
TTTTGTTCCTTTGACTTATGTAATCTATCTTATAATTTCTAAATACCATT
TTTTTTTTTGTTTAATAAACCCTTGACTATTTTCTTTCTGTATGCTCATA
TTTATCCATCTTTTTTTTTTTATAGCTCTCATCTTATGTTTTTCCATTGT
TCTCCCTCAGTTTACATGGTATTACTATTTCTCTTTCTCTTTTTGCCTCC
TTTTAAATATATTTAATTCTTTATCTTTTCTAATTCTATCTGTCTTCTCT
TTCTCTTACTTCTGTCTCTTATATCTATTTTATCTCGTCTTCACTTCATC
TATTCTGCAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_f02.b1 MSMg01no062_f02.b1 CHROMAT_FILE:
MSMg01no062_f02.b1 PHD_FILE: MSMg01no062_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:47 2005
         (665 letters)



>mm_chr1_17595350_17596414
          Length = 1065

 Score = 1208 bits (625), Expect = 0.0
 Identities = 655/665 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaaatagcctcacttttttgattctatagttcaatccatcattagaacttctttgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaaatagcctcacttttttgattctatagttcaatccatcattagaacttctttgagt 260

                                                                       
Query: 61  gggccccttgtgatggcattcagtggcaggcatacattaacaagtagcttatatgttaga 120
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggttccttgtgatggcattcagtggcaggcatacattaacaagtagcttatatgttaga 320

                                                                       
Query: 121 gcaggtacaccgagtgactcaacatttgaagttctgtgaaaattatggatctcagtggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggtacaccgagtgactcaacatttgaagttctgtgaaaattatggatctcagtggaa 380

                                                                       
Query: 181 cactgttacctttactgtaactgacacaacacttatttgaattggcatcaactgaaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgttacctttactgtaactgacacaacacttatttgaattggcatcaactgaaaagc 440

                                                                       
Query: 241 tagatcagttcctaacctgtacagtgtatcccagatagtctgggcatgctcattacacta 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tagatcagttcctaacctgtacagtgcatcccagatagtctgggcatgctcattacacta 500

                                                                       
Query: 301 tgtaacaaatatttgggctctgagtcaccagctgtatgttcaaattatactctccagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaacaaatatttgggctctgagtcaccagctgtatgttcaaattatactctccagtgt 560

                                                                       
Query: 361 cctgttactctggggagcttcgcatgaacttagacccaggactttctctaattgatctag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cctgttactctggggagcttcgcatgaacttagacccaggactttctctaattgttctag 620

                                                                       
Query: 421 actgcctgtagttccaatattctacaatgctctgaaccttttgtacagcgcccccctcct 480
           ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| 
Sbjct: 621 actgcctgtagttccaatattctacaatgctctgagccttttgcatagcgcccccctccc 680

                                                                       
Query: 481 cactgaaccccttgtacatggtcttctccttcaggttcatttatcctattcttcaagatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cactgaaccccttgtacatggtcttctccttcaggttcatttatcctattcttcaagatt 740

                                                                       
Query: 541 tttgtattagaatagcagttcctttaatgattttcatatgcacagccatgtgcacctcac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgtattagaatagcagttcctttaatgattttcatatgcacagccatgtgcacctcac 800

                                                                       
Query: 601 ccatcatttgaactgctattccgtctcactccctccacgtctattgtattgtcctcatca 660
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 801 ccatcatttgaactgctattccctctcattccctccacgtctattgtattgtcctcatca 860

                
Query: 661 taacc 665
           |||||
Sbjct: 861 taacc 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)