BAC Information

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BAC

Clone NameMSMg01-062F18
Chromosome1 (Build37)
Map Location 51,584,297 - 51,584,961
singlet/doubletsinglet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062F18.T7 (MSMg01no062_f18.b1)MSMg01-062F18.TJ (MSMg01no062_f18.g1)
ACCAG288352AG288353
length1,1741,159
length of high quality
(start - end)		715 (93 - 807)679 (84 - 762)
definitionCHROMAT_FILE: MSMg01no062_f18.b1 PHD_FILE: MSMg01no062_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:52 2005CHROMAT_FILE: MSMg01no062_f18.g1 PHD_FILE: MSMg01no062_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCCTTNNNNNNNGACATTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCCCTGAGGAATACCCTTTAAAAGACAAGCACCTGA
AAAAATGTTCAACATCCTTCATCATCAGGGAAATGCCCCCCAAAACAACC
CTGAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTTAGGTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGTACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACC
TAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAG
AAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGAA
CAAAACACCCATGGAAGGAGTAACAGAGACAAAGTTTGGAGCTGAGATGA
AAGGATGGACCATGTAGAGACTGCCATATTCAGGGATCCACCCCATAATC
AGCATCCAAACGCTGACACCATTGCATACACTAGTAAGATTTTTATCGAA
AGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAA
CACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCC
AAGGGAGGAGCTAGAGAGATAACCCAAGGAGCTAAAGGGATCTGGCACCC
CTATAGGTGGATCAACATTATGAACTAACCAGTACCCCGGAGCTCTTGAC
TCTAGCTGCATATGTATCAAAGAATGGCCTATTCGGCCATTCCTGTGAAA
TAAAGGCCCATTGAACACCCCAATCTTTATATGCCCCAGTAACGGGGAAA
AGTCAGGGCCAAAAAAGGGAAATGGTTGGTTAAAGGAAAGGTTTTTTTTC
TTTTTTATTTCTTCTTTTTCTTATTTTCTTCTTTTTTATTTTTTTTTTTT
TTTCTTTTTCTTATTATTCTTTTT

CTTCTTTTNNNAATCATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATTTAGTGCCTCTGTGTCAATCTCCTCT
GGTATCTTTATCTAAACCTAAGGAGCAACCCGGTAGGAAAGCCCTGCCTT
CAGAACAGAGCCATAGAAAAGTCCGTGTGATTTTCAAGGAGAACCAGTTA
GCGTTTACCCAGAAGAACTGGGGAATTTTAACTTGGCAGAAATGAATTAC
TCATTAGTGTCTCTCCTTCAAACGGAAAAACAAATTTACCTACATATTAA
GTGGGAACATCTCCACAGCCTTCTACTCTCAGGTTTCTACAGACAGCTAT
TGAGGAGTGTTGTGACTATGTGGTCTCATCCCATGACATCGTGGTCTACA
ACACAGGGTTGCCCTCTTATGATCCCTCCGCTGTTCACTCGATTCTTAAG
TGCCTGCCCCTGCACATCTGGCCCTAGCAGATCTCTCCTGATTGGTCCTC
ACTCCAGATAGTCAGGCTCTGCAGCTTGTTTAGAGGAGACCAGGCCTGTT
CAGGACAATATGGCCAGAGGCATGGCAGCTTGTTTTAATGCTTGTAATGA
GCAATCTGTAACAGGAGGGCCTTGCAACAGCCAACCCCAGTGAAGCTCTG
CAATCTGCCTCTGAGTCTGCACTTCCGGCTTTGCACTTCCGGCTTTGCTG
GGGTCTAGTTTTCCATTACTCGAGTTGGACATTGATTAGGAACTGACTTA
TTACATTATCATTAGCTGAATTCTGTCCTCTCTTCTCTGAATTTATATAT
TGAAACCCTAACCACCAGCCATGATAGGACTATATTTAGATTTAGGTCTC
TAAGCAAAAAATGAGTCATGAGAGGAGACTCCAATGCAGTAGGGAGAGAG
GCACGCACAGGCATGCCAAGGAAGACCAAGTTTATATCAGGGGGAGCAGG
CCATCTTTCAGCCAAGGGAAGAAATCTTCAGAGAAACTGACCCCTGTAAA
ATCCTTGGATATTGAAATTTTGGCCCTCCAAAATTGGGGGGAAAAAAAAT
TTCCGTGCCTGGTTAGGCCATTCACTTTTTATAGTCCCTGGGTGTTGTTA
AATACCCCTAACACAGGGTAGTCTTTTTCTTCTATAGTGGTGAAAACCCT
CTGGAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_f18.g1 MSMg01no062_f18.g1 CHROMAT_FILE:
MSMg01no062_f18.g1 PHD_FILE: MSMg01no062_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:52 2005
         (679 letters)



>mm_chr1_51584097_51585175
          Length = 1079

 Score = 1178 bits (609), Expect = 0.0
 Identities = 655/679 (96%), Gaps = 14/679 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgtcaatctcctctggtatctttatctaaacctaaggagcaacccggtaggaaagcc 60
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 201 ctgtgtcaatctcctctggtatctttatctaaacctaaggagcaagaaggtaggaaagcc 260

                                                                       
Query: 61  ctgccttcagaacagagccatagaaaagtccgtgtgattttcaaggagaaccagttagcg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ctgccttcagaacagagccatagaaaagtccgtgtgattttcaaggcgaaccagttagcg 320

                                                                       
Query: 121 tttacccagaagaactggggaattttaacttggcagaaatgaattactcattagtgtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttacccagaagaactggggaattttaacttggcagaaatgaattactcattagtgtctc 380

                                                                       
Query: 181 tccttcaaacggaaaaacaaatttacctacatattaagtgggaacatctccacagccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttcaaacggaaaaacaaatttacctacatattaagtgggaacatctccacagccttc 440

                                                                       
Query: 241 tactctcaggtttctacagacagctattgaggagtgttgtgactatgtggtctcatccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactctcaggtttctacagacagctattgaggagtgttgtgactatgtggtctcatccca 500

                                                                       
Query: 301 tgacatcgtggtctacaacacagggttgccctcttatgatccctccgctgttcactcgat 360
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 501 tgacatcgtggtccacaacacagggttgtcctcttatgatccctccgctgttcgctcgat 560

                                                                       
Query: 361 tcttaagtgcctgcccctgcacatctggccctagcagatctctcctgattggtcctcact 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttaagtgcctgcccctgcacatctggccctagcagatctctcctgattggtcctcact 620

                                                                       
Query: 421 ccagatagtcaggctctgcagcttgtttagaggagaccaggcctgttcaggacaatatgg 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagatagtcaggttctgcagcttgtttagaggagaccaggcctgttcaggacaatatgg 680

                                                                       
Query: 481 ccagaggcatggcagcttgttttaatgcttgtaatgagcaatctgtaacaggagggcctt 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagaggcatggcagcttattttaatgcttgtaatgagcaatctgtaacaggagggcctt 740

                                                                       
Query: 541 gcaacagccaaccccagtgaagctctgcaatctgcctctgagtctgcacttccggctttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcaacagccaaccccagtgaagctctgcaatctgcctctgagtctgcacttccggctttg 800

                                                                       
Query: 601 cacttccggctttgctggggtctagttttccattactcgagttggacattgattaggaac 660
           |              |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 c--------------tggggtctagttttccattactcgagttggacattgattaggaac 846

                              
Query: 661 tgacttattacattatcat 679
           |||||||||||||||||||
Sbjct: 847 tgacttattacattatcat 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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