BAC Information

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BAC

Clone NameMSMg01-062I23
Chromosome1 (Build37)
Map Location 48,833,738 - 48,834,449
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903
Downstream geneLOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062I23.T7 (MSMg01no062_i23.b1)MSMg01-062I23.TJ (MSMg01no062_i23.g1)
ACCAG288506AG288507
length1,1111,152
length of high quality
(start - end)
712 (126 - 837)642 (87 - 728)
definitionCHROMAT_FILE: MSMg01no062_i23.b1 PHD_FILE: MSMg01no062_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:17 2005CHROMAT_FILE: MSMg01no062_i23.g1 PHD_FILE: MSMg01no062_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTTATGNNNNAACAATGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCACTCTTTGTCCCATGCCTTTAAAAGCTTTTAGAGAAGCT
TTATGTGTTGCTAAGTACCCTATATAGTCTTTATGCGACGGTAAAACATA
TAATTTGATTAGTTAAATTAATATTATGCAAAAGGAACAATATTGATGGA
CACATATTCTAGAAATAATGATAGATTATATAAGTATAATAATATAAATA
ACATTGGATTGTAAGAAAAGACATATAGAGCTGGGTATCTGTTCACTACA
TTTGATGCCTGATGTCTTTTAATTTTGATGTTGTTTTCACTTATTTTCAT
CATTATAGCTTGTCTATTGGAGAAAGTTGTCAATGGGAATCTCCTACTTT
TAATGAGTTGATGTTAATCTGTGCTTTTAATTTCAGTAGCAGACTTTTTA
TGAAATTGGTTTCACCTGAGTTTGGTGCCTACATGTTTAGGAAAGCAATG
TTTTCTTGAATAATTGTTGTATTGCTTAGGATGAAATATTATCTGTTCTT
ATTAGTTTAGTATAAACTATATTTTGCCAGATATTAGGATATTGATACTT
TTTATTTCTTGGTCCCATTTTAAATGAAGTATCTTTGTTAATCCTTATAC
ATGAAACTGATATTTTCATTATACTTAGAAGTCTATATTCTAGAAATTAG
ATTGAGTCTTACATTTAAGTTGCTTTATGTTCTTTGTATATTCTTGTCAA
TAATTCTGTAATATAATATAATAGCTTATAAAGATCTCTTCTAACATGTT
AGCTTCCTATTCACTTAATCGATTATTTCCTTTTCTATAGAAAATCTTTC
TATTTATATAATGTTCCATTTGTCTCTTGTTTGTTCTAATTATTTAATAA
ATATAGCCCTATTAAAAGACTATTTTTTCTTTATCCCAACTTGTAAGGAA
ATTGTTTGGGTAATTGTCCTAAAGCTTCCCGTATTTTCAGGTTTTTTTGT
GTGAAATCTTATGGAACTATTTTTCCCCTTTTTTGAATTTGTGGCAAAAT
GGGAGAAAACTTTTTTTCCCCATTGCTATTTCCCCCTACCGGTGGATAAA
ATCCTCCTTTN
CCTTCCTTTTNNNNTATGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGTTCAGTTCTGAGCCCC
ATTTTTTAGTGGGGTTCCTTGATTTTCTGAAGTCCACCTTCTTGAGTTCT
TTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTG
CCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCACTTGTCAATTCTCGAT
CTTACAGCACAAGCCATCGATGTTCTGTTCAGGAATTTTTCCCCTGTGCC
CATAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCA
TTTTGAATGAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGAATTGGG
AACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGAT
GAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAA
TCAGCATCCAAACGCTGACACCATTGCATATACTAGCAAGATTTTATCGA
AAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAA
ACACAGAAGTGGATGCTCACAGTCAGCTACTGGATGGATCACAGGGCTCC
CAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACC
CTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGAC
TCTAGCTGCATATGTATCAAAAGATGGTCTAATCGGTCATCATTGGAAAA
AGAGGCCCATTGAACATGCAAACTTTTTATGCCCCAGTTACGGGGGAACG
CCAGGGCCTAAAAAGGTCGAGTGGTTTGGTTAAGTGAATGTTTTTTTTTC
TCTCTTTTTTTTCTTCTTTCTCTCTTCTTTTTTTTCTTTTTTTCTTTTCC
TTTTTTTTCCTCTTCTCTATCTTCTTTTCTTTGTTTTTTTTTTATTCTTC
CTCTTCTTTCTCCTCTTTTTTTTTTCTTTTTTCTTCTATTTTTTCTTTCT
TCTTTCTTCCTTTCTTCTCCATTGTCTCATCTTTCTACTATATCGTTCCC
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_i23.b1 MSMg01no062_i23.b1 CHROMAT_FILE:
MSMg01no062_i23.b1 PHD_FILE: MSMg01no062_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:17 2005
         (712 letters)



>mm_chr1_48833538_48834649
          Length = 1112

 Score = 1324 bits (685), Expect = 0.0
 Identities = 706/713 (99%), Gaps = 2/713 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctttatgcgacg-gtaaaacatataatttgattagttaaattaatattatgcaaaag 59
           |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctttatgtga-gagtaaaacatataatttgattagttaaattaatattatgcaaaag 259

                                                                       
Query: 60  gaacaatattgatggacacatattctagaaataatgatagattatataagtataataata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaacaatattgatggacacatattctagaaataatgatagattatataagtataataata 319

                                                                       
Query: 120 taaataacattggattgtaagaaaagacatatagagctgggtatctgttcactacatttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 taaataacattggattgtaagaaaagacatatagagctgggtatctgttcactacatatg 379

                                                                       
Query: 180 atgcctgatgtcttttaattttgatgttgttttcacttattttcatcattatagcttgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgcctgatgtcttttaattttgatgttgttttcacttattttcatcattatagcttgtc 439

                                                                       
Query: 240 tattggagaaagttgtcaatgggaatctcctacttttaatgagttgatgttaatctgtgc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tattggagaaagttgtcaatgggaatctcctacttttaatgagttgatgttaatctgtgc 499

                                                                       
Query: 300 ttttaatttcagtagcagactttttatgaaattggtttcacctgagtttggtgcctacat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttaatttcagtagcagactttttatgaaattggtttcacctgagtttggtgcctacat 559

                                                                       
Query: 360 gtttaggaaagcaatgttttcttgaataattgttgtattgcttaggatgaaatattatct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtttaggaaagcaatgttttcttgaataattgttgtattgcttaggatgaaatattatct 619

                                                                       
Query: 420 gttcttattagtttagtataaactatattttgccagatattaggatattgatacttttta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gttcttattagtttagtataaactatattttgccagatattaggatattgatacttttta 679

                                                                       
Query: 480 tttcttggtcccattttaaatgaagtatctttgttaatccttatacatgaaactgatatt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttcttggtcccattttaaatgaagtatctttgttaatccttatacatgaaactgatatt 739

                                                                       
Query: 540 ttcattatacttagaagtctatattctagaaattagattgagtcttacatttaagttgct 599
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 740 ttcattatacctagaagtctatattctagaaattagatcgagtcttacatttaagttgct 799

                                                                       
Query: 600 ttatgttctttgtatattcttgtcaataattctgtaatataatataatagcttataaaga 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttatgttctttgtatattcttgtcaataattctgtaatataatataatagcttataaaga 859

                                                                
Query: 660 tctcttctaacatgttagcttcctattcacttaatcgattatttccttttcta 712
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 860 tctcttctaacatgttagcttcctattcacttaatcgattaattccttttcta 912


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)