Query= MSMg01no062_k20.b1 MSMg01no062_k20.b1 CHROMAT_FILE:
MSMg01no062_k20.b1 PHD_FILE: MSMg01no062_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:31 2005
(676 letters)
>mm_chr1_64548750_64549825
Length = 1076
Score = 1133 bits (586), Expect = 0.0
Identities = 624/644 (96%), Gaps = 14/644 (2%)
Strand = Plus / Minus
Query: 1 aagatgccctattttccagtactatgtagtccttaatgtccagaatg----cccctttca 56
||||||||||||||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 1044 aagatgccctattttccagtattatgtagttcttaatgtccagaatgtagt----tttca 989
Query: 57 actcccctgacttcttatctagttttcatccaagaaaccacatgtgcctactaaatatca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 actcccctgacttcttatctagttttcatccaagaaaccacatgtgcctactaaatatca 929
Query: 117 gtagttttcttgctatagaacagaggctcacaaacatagcatgcaccagaatttcctata 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gtagttttcttgctatagaacagaggctcacaaacatagcatgcaccagaatttcctata 869
Query: 177 agatgtgctggcatatggaatactggactacatctctcttttagtttctcatttagtagg 236
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 agatgtgctgacatatggaatactggactacatctctcttttagtttctcatttagtagg 809
Query: 237 aaatcaagaacttgtgtgcctaacaggttctgacatactgctgaaaatgctagtctagga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaatcaagaacttgtgtgcctaacaggttctgacatactgctgaaaatgctagtctagga 749
Query: 297 tcatattttgggtcactaccatcttaaaagaaagcatgggtattagagtagtatctctat 356
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 748 tcatattttgggtcactaccatcaaaaaagaaagcatgggtattagagtagtatctctat 689
Query: 357 agtgggccatcatttaatctttgatcccttacatttctatactaaaatcatgctttgggg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agtgggccatcatttaatctttgatcccttacatttctatactaaaatcatgctttgggg 629
Query: 417 gatcaagtatttcttctttaatatgtcaattctttacacaatttaataatttgtatataa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gatcaagtatttcttctttaatatgtcaattctttacacaatttaataatttgtatataa 569
Query: 477 ggtttgttttagttaggattctattatgcagcaaaccacttcaacagtatcttaaaacag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggtttgttttagttaggattctattatgcagcaaaccacttcaacagtatcttaaaacag 509
Query: 537 tctctctctctctctctctctctctcttcatccacccacccacccacccacccacccatc 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 508 ------tctctctctctctctctctcttcatccacccacccacccacccacccacccgtc 455
Query: 597 tatctatctatctatctatctatctatctatctatctatctatc 640
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatctatctatctatctatctatctatctatctatctatctatc 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_k20.g1 MSMg01no062_k20.g1 CHROMAT_FILE:
MSMg01no062_k20.g1 PHD_FILE: MSMg01no062_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:31 2005
(313 letters)
>mm_chr1_64410465_64411177
Length = 713
Score = 582 bits (301), Expect = e-171
Identities = 310/313 (99%)
Strand = Plus / Plus
Query: 1 ggccagactgccctcaaactcacacagacctgtctgtctctgcctcccaggtcctgggac 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 201 ggccagactgccctcaaactcacacagatctgcctgtctctgcctcccaggtcctgggac 260
Query: 61 taaaagcatgcacgactatgctggtgtatggaaataaagtttagtcaatgttgaaaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaagcatgcacgactatgctggtgtatggaaataaagtttagtcaatgttgaaaatct 320
Query: 121 ctcctggttgaatgacttgctcaatttctcttggaatctctactgagaacagaattagca 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ctcctggttgaatgacttgctcaatttctcttggaatccctactgagaacagaattagca 380
Query: 181 accttgtgggaaggagacagtggggagggaagagccaaaatgttaggctatgtggctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accttgtgggaaggagacagtggggagggaagagccaaaatgttaggctatgtggctgtg 440
Query: 241 tttcaggagcaggatgtatagcttgcctttcaagtctaagtttctgtgagaaagtcaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcaggagcaggatgtatagcttgcctttcaagtctaagtttctgtgagaaagtcaaaa 500
Query: 301 gttctaattcagg 313
|||||||||||||
Sbjct: 501 gttctaattcagg 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
