BAC Information

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BAC

Clone NameMSMg01-063B17
Chromosome1 (Build37)
Map Location 94,721,768 - 94,722,078
singlet/doubletsinglet
Overlap genenone
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B17.T7 (MSMg01no063_b17.b1)MSMg01-063B17.TJ (MSMg01no063_b17.g1)
ACCAG288924AG288925
length691692
length of high quality
(start - end)
313 (43 - 355)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no063_b17.b1 PHD_FILE: MSMg01no063_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:20 2005CHROMAT_FILE: MSMg01no063_b17.g1 PHD_FILE: MSMg01no063_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCCCACCTCCAGCTGCATCTTGTTGGATGAGACCAGTCTCCCTGAC
ACATCCAGGATCCTGGAATATCCTTGTATTGCCCACCCCAAGTCCCTCCG
CATGGCTACCCTCTCATCCCCTTTCCTGAACACTCACAGAAATTGTAGAC
CCTGTTGTCTCTCCTCCAGTCATCAAGAAGCTGTGCACCCCACCTGTTCA
GGTCCACTGCTCTTGTTTCTTGCCCTCTAGAGACCACCTGGCAAAGGTGC
CCTTATAGAGAGGAATACATATGACATAGGGCTGTAGCTCACCTACTAAG
GCTGTATTTACTTGCTCTCCACGACCCGTGTGGTGCCTCCCCTTATAACA
AGACTCTACCTTATGGGCCTGACTCTTCCTGCCTTAGGCCAGTGCCTATA
GTGCAGACCTGAGTCCTGATCCAGTGCAAGCCTGGGTCCTCCTCAGCCTG
TGTGCTGCCAGCAAGAGTTTCAGAGGCCACTGACACCTCCCAAGCAGGCC
TGGGACTCCTAGCCCAGATGAAGGGGGATGTCCACTCCTGCTCTCTGGCT
TCCATGGCTGGGAGATGAAGATACCCTACCTAGTCCCTTTCCCTTGTCCA
GCTCAGCTCTGAGGTAACTCTCCCTAGGGATAATCCTGGGC
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTTTTCTCACTGTATTGGCTAGTT
TTGTGTCAACTTGACACAAGCTGGAGTTATCACAGAGAAAGGAGCTTCAG
TTGGGGAGATGCCTCCACGAGATCCAGCTGTAAGGCATTTTCTCAATTAG
TGATCAAGGGGGAAGGTCTCCTTGTGGGTGGGACCATCTCTGGGCTGGTA
GTCTTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCC
AGTAAAGAACATCCCTCCATGGACTCTGCATCAGCTCCTGCTTTTTGACG
TGCTTGAGTTCCTGTCCTGACTCCCTTTAGTGATCAACAGCAATGTGGAA
GTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGTT
GTTTGTGCAGGAATAGAAACCCTGACTAAGACACTCACCATTGCTTCCAA
ATGTCAGAATCGGGTCCAATTTGTGACTTCCAGTGATCTTTGTTAACTTT
TCAGTCTTTAACAGTTTTAGTAGAAAAGCCTCGTTCCCAGCCAGTGATTC
ACTGACTTTTATAGCAACAGCAGTGACTCAGTGAACCCCTTCATGTTTGC
AGACACCCGTTTTGGCAAGGAAAGGTGCTAATTTGCTGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b17.b1 MSMg01no063_b17.b1 CHROMAT_FILE:
MSMg01no063_b17.b1 PHD_FILE: MSMg01no063_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:20 2005
         (313 letters)



>mm_chr1_94721565_94722278
          Length = 714

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctcccacctccagctgcatcttgttggatgagaccagtctccctgacacatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcccacctccagctgcatcttgttggatgagaccagtctccctgacacatc 263

                                                                       
Query: 64  caggatcctggaatatccttgtattgcccaccccaagtccctccgcatggctaccctctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caggatcctggaatatccttgtattgcccaccccaagtccctccgcatggctaccctctc 323

                                                                       
Query: 124 atcccctttcctgaa-cactcacagaaattgtagaccctgttgtctctcctccagtcatc 182
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcccctttcctgaagcactcacagaaattgtagaccctgttgtctctcctccagtcatc 383

                                                                       
Query: 183 aagaagctgtgcaccccacctgttcaggtccactgctcttgtttcttgccctctagagac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagaagctgtgcaccccacctgttcaggtccactgctcttgtttcttgccctctagagac 443

                                                                       
Query: 243 cacctggcaaaggtgcccttatagagaggaatacatatgacatagggctgtagctcacct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacctggcaaaggtgcccttatagagaggaatacatatgacatagggctgtagctcacct 503

                      
Query: 303 actaaggctgt 313
           |||||||||||
Sbjct: 504 actaaggctgt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)