BAC Information

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BAC

Clone NameMSMg01-063E07
Chromosome1 (Build37)
Map Location 77,544,438 - 77,544,950
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063E07.T7 (MSMg01no063_e07.b1)MSMg01-063E07.TJ (MSMg01no063_e07.g1)
ACCAG289048AG289049
length6811,127
length of high quality
(start - end)
519 (48 - 566)---
definitionCHROMAT_FILE: MSMg01no063_e07.b1 PHD_FILE: MSMg01no063_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:33 2005CHROMAT_FILE: MSMg01no063_e07.g1 PHD_FILE: MSMg01no063_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGATCCTAGAAAATTCTGGCTCGGGACTTCCTTTTGCTGCTT
GATCCTTTTAGGGCATTAACACAATGAGGACATTTAACATTTACACATTC
TTCTTCCTAATCTAGTTTAGCAGAATAAATTAGAAGCAAGGACTAATCAA
CAAATTGTCAAAAGAGACTTTGCAAGGCATTCCGTCAGAATACATTGTTT
CCATTCCTGTAACAGAATTCCTGAGAAAATCAACTGAAGAAAGGAAAGGT
TTATTTTGGCTCAGAGTTGCAAAGGTTTCTGGTACATGGTAACTTGCCTC
CGTTGTTTCCAGACCTGAGATAGAGCAGAGCCTCATGGTGGAGACTGCAT
AGGGAAACTGAACCACTTAACTCCTGGAAAGCAGCAGTTATAAAACAAAC
AAGAAGAGCTGATGAGATGGTTCAGTGGGTAAGAGCACTGACTACTCTTC
CGAAGGTCCTGAGTTCAAATCCCAGCATCCACATGGTAGCTTACTACCAC
CCGTAATGAGATCTGACACCTTCTTCTGGTGCACCTGAAGACAGCTACAG
TGTACTTATGGAATAAATCTTTGGGGCCGAGCTAGCAGGGACTAAACAGG
GGAGGTTGACCAGAGTAAGCAGGGTCTAACT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNCCCNNNNNCCCC
CCCNNNNNNNCCCCNNNNNNNTTNNCCCCACCGGTTTTNCTCTGTATNTT
TTTTNCGTTNNTTTNCTTCCNTCTTTTTTTTTTCCNCTTNCCTCCCCTTT
TTTCTTCTCCGCCCCTCTCGTTTTGACCCATTTCCGCTCCGCTGGTCTTC
TCCTCCCTTTCGGCTTCCGCCGCCGCGCCCTCTTGTTCGTCGCCCGTGCT
GCCTCTCTGTGCCCCCGTCGCCCTCCTTGTGTTTCTGCGCCTTCCCTTTN
TCTCTTCTNCTCCCCTGTCCCATATTATAGGACGGAACCCACGCGTTCCG
CGATCATACGACGGTGCGGTCTCGTGTCACCGCTCTAATCANAGTTATTA
CGCGCAACTCTTTAACACGTTCACCCACTCGTCGAACGTTATGGCGTATT
TACTTCTTTATATATCCTGTAATTATCCTCCGTTCCCCCCTATTCTCCCT
CTGTTCCCCTCTTCCCGCACATATCTCTTATTATTTCTTTTTATTTTTTA
CTCTCATTATTTCGGTCGTCGTGTCTATCTGCTTATGCCGTAGTCCTTTC
TGAGCCCTTTCCTTCACGATCCTTGCGCGCGATTTTGACGCGCCCGCTCT
ATATGACGCGGATGATTGTACTCAAGAGAAATAGAACTGACATGAGTATT
GAGAGGGAATGATCACCCATATTCCTCCCTTTNTCTTTCTTCTCCCTCGC
CAAGCAATCTATGGGTAATAGCAACGAACCGCCATGAAGGAATATTTGAT
CCCTCCTTCCTCATGAATTATAGGGGATAGTTGTGAGGGAATGTATAAGA
AGGGGAGGGAAGCACCTTAGGAAGTGTAGCGCATTAGTAAGCAGTATTAG
CAGTACTAGAGTTGATTATCGGATGAAGTGGTCTGGGGCGACGTAGAGAG
AGGCTGAGGATAGGCGAGGGATGCTCGCTGCGTGATCATTTGTTATCTTT
TTATGATAGCGAGCGAAATTAATAACAGTCTTAAATATAAAATATAGACA
TTAATAACNCTAATATCAAATATTAATATATCGANATATATAGAGGAGAG
CAGTAGATAAGAGTAGGCTGGGACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_e07.b1 MSMg01no063_e07.b1 CHROMAT_FILE:
MSMg01no063_e07.b1 PHD_FILE: MSMg01no063_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:33 2005
         (519 letters)



>mm_chr1_77544070_77544988
          Length = 919

 Score =  924 bits (478), Expect = 0.0
 Identities = 505/514 (98%), Gaps = 3/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcaggatcctagaaaattctggctcgggacttccttttgctgcttgatccttttagggc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ttcaggatcctagaaaattctggctcgggacttccttttgctgcttgatccttttagggc 822

                                                                       
Query: 68  attaacacaatgaggacatttaacatttacacattcttcttcctaatctagtttagcaga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 attaacacaatgaggacatttaacatttacacattcttcttcctaatctagtttagcaga 762

                                                                       
Query: 128 ataaattagaagcaaggactaatcaacaaattgtcaaaagagactttgcaaggcattccg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ataaattagaagcaaggactaatcaacaaattgtcaaaagagactttgcaaggcattccg 702

                                                                       
Query: 188 tcagaatacattgtttccattcctgtaacagaattcctgagaaaatcaactgaagaaagg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcagaatacattgtttccattcctgtaacagaattcctgagaaaatcaactgaagaaagg 642

                                                                       
Query: 248 aaaggttt-attttggctcagagttgcaaaggtttctggtaca-tggtaacttgcctccg 305
           |||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 641 aaaggtttaactttggctcagagttgcaaaggtttctggta-agtggtaacttgcctccg 583

                                                                       
Query: 306 ttgtttccagacctgagatagagcagagcctcatggtggagactgcatagggaaactgaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttgtttccagacctgagatagagcagagcctcatggtggagactgcatagggaaactgaa 523

                                                                       
Query: 366 ccacttaactcctggaaagcagcagttataaaacaaacaagaagagctgatgagatggtt 425
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 522 ccacttaactcctggaaagcagcagttataaaacaaacaagaacagctgatgagatggtt 463

                                                                       
Query: 426 cagtgggtaagagcactgactactcttccgaaggtcctgagttcaaatcccagcatccac 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cagtgggtaagagcactgactactcttccgaaggtcctgagttcaaatcccagcatccac 403

                                             
Query: 486 atggtagcttactaccacccgtaatgagatctga 519
           |||||||||||| ||||||  ||||| |||||||
Sbjct: 402 atggtagcttacaaccacctataatgggatctga 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)