BAC Information

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BAC

Clone NameMSMg01-063E11
Chromosome1 (Build37)
Map Location 50,176,825 - 50,177,138
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666924, C230029F24Rik, LOC627430, LOC100041981, EG666962
Downstream geneEG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063E11.T7 (MSMg01no063_e11.b1)MSMg01-063E11.TJ (MSMg01no063_e11.g1)
ACCAG289056AG289057
length691747
length of high quality
(start - end)
318 (45 - 362)285 (131 - 415)
definitionCHROMAT_FILE: MSMg01no063_e11.b1 PHD_FILE: MSMg01no063_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:34 2005CHROMAT_FILE: MSMg01no063_e11.g1 PHD_FILE: MSMg01no063_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTAATTCTTCAGATTTACATAAGTAAAGACACAAATGACATACA
CAAAATAAGATAACTAAAGAAATAGGTAATAAATGATTATTTAGGATATA
TAGGTGGTGGGAAGCAGACCACATGTGAATGTAGTAAATAACCTGCCAAA
TGCATATAATGCTGACTATTACTATTAGTGGCACAGGGACAGAGATAGAA
AAGAAAAAACAAAAGAGGTACTGAAAGAAAGAGGTTGAAACAGAGAGAAA
CAGGACACAAAGAAAGAGATCCAGGAGGAGATTGCAACTTTGGGCTATGT
GGGATAGGATCAGTTCCAAGGTCCTACCACATGCCCAGGAAGTCACCTCC
TAGTTGATACTAGGACACAAGAAATCTAATTTTAGTGTTTTTTTCTTCGA
CCTAAGCAGGAATCCTTATTAGAAGCATACAATGAAAAATTATGGACACA
GGGCAGGCCATGTGTGTCTATATATGTCTGTCATCTGGAGAGAAATAGTA
GTTCCGGAGAAACAAATTGAATTTAAATGTAATAACAAAGAGTGTTTTTT
TAGCACATGCAATCCAGTGCTGCAGAATTTTCCTAGATATAGGATTATTT
TGTTTCTCCTACCCTTATTTTTCTCATTCCCGTTTACTCCC
GGCCCGGGGGGNNNNNNTTTTTNNCNNTTTCCTTCCCCCNCNNNCCNNNN
NNNCCTCTATGCTATGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAAGGTCTTACTCA
AGGACGTTCTAGGACTGTTGGAACACTGGCTGAAGGCTTTAGCTAAGTCA
GAATTCAATCTTAAACGGCACTTATAATAGGAAAAAACTGAAAGAGAGCA
CTAGACTAACACGGGAATGGAAAATTAATGTATGGGTTAGAGGGAACACC
AGACTCCAGGAGGAGAGCTTTCTTGAAGCTCTTTGCCTCATGAGTGACTT
TCAAGCCTCTCTGCTTAAGCTGAGTCGACCAGAGTGCATGGCACTTATAG
AGCACACCTCCAGCATTAAGACCCGACACCCCATGAGGGATGGGGTTGCC
ATTCCACAGTCAAAGCTCTGACACATAATTGTTTCTGTCTGTAATAATTA
CAGGGATGGAAATGGAGAGGATCCTGAGGAAAAGAAGGTTCAGTGACAGG
CCCAAAGTGGGACCCAGATCAAGGGGAGGTCCCAAGGTCTGACCCTATTA
CTGAAGCTATGGAGCACTCACAAAAATTGATCTATCATGACTGCCCTATG
AAAGACCCAACAAGCTGCTGAAAGAGTCACATGTAGATATTTTGCACCCA
ACCACTGGACAGAAGCAGCTGACCCCTTTGTTGTTGAATTAACGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_e11.b1 MSMg01no063_e11.b1 CHROMAT_FILE:
MSMg01no063_e11.b1 PHD_FILE: MSMg01no063_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:34 2005
         (318 letters)



>mm_chr1_50176621_50177338
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttaattcttcagatttacataagtaaagacacaaatgacatacacaaaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttaattcttcagatttacataagtaaagacacaaatgacatacacaaaataa 264

                                                                       
Query: 65  gataactaaagaaataggtaataaatgattatttaggatatataggtggtgggaagcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gataactaaagaaataggtaataaatgattatttaggatatataggtggtgggaagcaga 324

                                                                       
Query: 125 ccacatgtgaatgtagtaaataacctgccaaatgcatataatgctgactattactattag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacatgtgaatgtagtaaataacctgccaaatgcatataatgctgactattactattag 384

                                                                       
Query: 185 tggcacagggacagagatagaaaagaaaaaacaaaagaggtactgaaagaaagaggttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggcacagggacagagatagaaaagaaaaaacaaaagaggtactgaaagaaagaggttga 444

                                                                       
Query: 245 aacagagagaaacaggacacaaagaaagagatccaggaggagattgcaactttgggctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacagagagaaacaggacacaaagaaagagatccaggaggagattgcaactttgggctat 504

                         
Query: 305 gtgggataggatca 318
           ||||||||||||||
Sbjct: 505 gtgggataggatca 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)