Query= MSMg01no063_f06.b1 MSMg01no063_f06.b1 CHROMAT_FILE:
MSMg01no063_f06.b1 PHD_FILE: MSMg01no063_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:38 2005
(617 letters)
>mm_chr1_148776067_148777083
Length = 1017
Score = 1104 bits (571), Expect = 0.0
Identities = 604/615 (98%), Gaps = 1/615 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatttctacaaattctc-aagatagctatttgaggtcaaggtttttcattgtt 62
||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 998 ggaattccatttctagaaattctcaaagatagctatttgaggtcaatgtttttcattgtt 939
Query: 63 ttatcataatatcacctagtccagtgaattttatgtagagttaatatgttatggttttgt 122
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 ttatcataatatcagctagtccagtgaattttatgtagagttaatatgttatggttttgt 879
Query: 123 tcgcatttatttctcctctcagtctttgtctctctgtctgtctttgtttctctctgtctc 182
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 878 tcgcatttatttctcctctcagtctttgtctctctatctgtctttgtttctctctgtctc 819
Query: 183 tctgtgtcactctccctcccccatctctctatccagcatacatatgcaaatgttaacccc 242
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tctgtgtctctctccctcccccatctctctatccagcatacatatgcaaatgttaacccc 759
Query: 243 aggaatggggcaggttttggcttcagtctttaagtggtctcaaggtattgaatttaggtt 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 758 aggaatggggcaggttttggcttcagtctttaagtggtctcaaggtattgaattcaggtt 699
Query: 303 gctagacaagctatacaaatgttttattatcaaccaggatatatattaaaaagcacatat 362
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gctagacaaggtagacaaatgttttattatcaaccaggatatatattaaaaagcacatat 639
Query: 363 tttactattaaattcaatgtaatcagatgtggaggaaagaataatgacatcttgtatttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttactattaaattcaatgtaatcagatgtggaggaaagaataatgacatcttgtatttt 579
Query: 423 tgtgacacggaaaagaatcaatcaggtccttcataaaataagattctggtagcttatata 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgtgacacggaaaagaatcaatcaggtccttcataaaataagattctggtagcttatata 519
Query: 483 cctcctattatgaagatagtctcaatgcaacttttgtcacatgtagcttttacctaaatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cctcctattatgaagatagtctcaatgcaacttttgtcacatgtagcttttacctaaatc 459
Query: 543 aatcaggcaaaaattgaacaatttctcacagaaatgtcttttgggtgtgttagtcatgtt 602
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 458 aatcaggcaaaaattgaacaatttctcacagaaatgtcttttgggtgtgttggccatgtt 399
Query: 603 agtgaactattgtta 617
|||||||||||||||
Sbjct: 398 agtgaactattgtta 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_f06.g1 MSMg01no063_f06.g1 CHROMAT_FILE:
MSMg01no063_f06.g1 PHD_FILE: MSMg01no063_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:38 2005
(541 letters)
>mm_chr1_148641788_148642728
Length = 941
Score = 992 bits (513), Expect = 0.0
Identities = 534/541 (98%)
Strand = Plus / Plus
Query: 1 cttgcctaaggaaattaggctacaagttctaagagacagaattcagacttgtgaaggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgcctaaggaaattaggctacaagttctaagagacagaattcagacttgtgaaggaac 260
Query: 61 cctgggggaagctccaagaggagttaatactgcatacaaaaacgagtttgaaagcatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggggaagctccaagaggagttaatactgcatacaaaaacgagtttgaaagcatttt 320
Query: 121 acaaatagaaatctggatggggttaataaagcaattttgcaattttaagagaagttaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaatagaaatctggatggggttaataaagcaattttgcaattttaagagaagttaaaa 380
Query: 181 atattactctgacttgttcaacatcgctcagttttcatgttaatgctgtaaccacaaatt 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 atattactctgacttgttcaacatctctcagttttcatgttaatgctgtaaccacaaatt 440
Query: 241 tatgcccagatgacctgtgattcggaggtttttctgagagctaaaagttaatgtatacct 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgcccagatgatctgtgattcggaggtttttctgagagctaaaagttaatgtatacct 500
Query: 301 tcctttagcagacactaaactgtgactttgtgtgtctactgtgcgttctggtgatattgt 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tcctttagcagacactaaactgtgactttgtgtgtctactgtgtgttctggtgatattgt 560
Query: 361 tacatggtactttttgggaaaaaatgatcggcttgaggtaaacaatggaaaggcttttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatggtactttttgggaaaaaatgatcggcttgaggtaaacaatggaaaggcttttga 620
Query: 421 caatatattattgttgtatagcaaggaagtgtgccatgaataaaagatgatgagttagat 480
| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 621 tactatattattgttgtatagtaaggaagtgtgcaatgaataaaagatgatgagttagat 680
Query: 481 agaaagatagatggatagatagataatagatagatagatagatagatagatagatagata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaagatagatggatagatagataatagatagatagatagatagatagatagatagata 740
Query: 541 g 541
|
Sbjct: 741 g 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
