BAC Information

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BAC

Clone NameMSMg01-063F15
Chromosome1 (Build37)
Map Location 6,811,103 - 6,811,385
singlet/doubletsinglet
Overlap geneSt18
Upstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneLOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063F15.T7 (MSMg01no063_f15.b1)MSMg01-063F15.TJ (MSMg01no063_f15.g1)
ACCAG289112AG289113
length750767
length of high quality
(start - end)
314 (109 - 422)283 (155 - 437)
definitionCHROMAT_FILE: MSMg01no063_f15.b1 PHD_FILE: MSMg01no063_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:40 2005CHROMAT_FILE: MSMg01no063_f15.g1 PHD_FILE: MSMg01no063_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAAAAATTATAAAANNAAAAAAAAAAATNAAATAAANATAAAAANNC
CTTCTCTTTTCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTTGTTCACTCCTGAGCCCCATTTTTTAATGG
GGTTATTTGATTTTCTGAAGTCCACCTTCTTGCGTTCTTTATATATGTTG
GATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATC
TGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAAC
TTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAA
GCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAG
GCTTTTCCCCACTTTCTCCTCTATTAGCTTCCCCGCCCCTGGTTTTATGT
GAAGTTCCTTGATCCACTTAGATTTGACCTTAATACAAGGAGATAAGTAT
GGATCGATTCGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCA
ATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGT
CGAAGATCTCGTGCCAATTAGGTGTGTGGTTTCCTTTCTGGGTCTTCATT
TCTCATTCCATTGGCCCTATCGTCTGCCTCTATACCACTACCATGCACCT
TTTATCCCAACTGCTCCCGAACCCTGGCCTTTTCCCCGGTCCGCTGACTC

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNCCCCCCCC
CNNNNNNCCCCCNTTTCCTTCCTTNNNNCTCGATGAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGAGAGCCTGGTATTTCTCTGTATTTTTAGAGGATATATTTTTCTT
TGTTTAAGAACCTCATTTGTTTAAAGATTGTTTTGAGTGGATTTTGGCAA
GCACCTCTTCCTGGGGCTTACTTGGCTTGGCTTTTTCCAGAAGCTAATTC
TGATTCTTCTGTCAAATGCTCGGTGGCACTGTGTTACCTGCTCTCCTGAA
GGCCTGGCACAGCACAGGCACGCAGCTGACCACACAAGGACGGGGTTGCC
CTTAAAGGGAAACGCCTCGGTTTGCACTGCATAGGTTTTAGGTTTCACCA
CTTGCCTCAGGAACTCCCCTATTTTAAGCAGGAGTAAAATCTGTAACAGA
ATGTTTGGGGACTCTATGTGGGCAAGTTTCTAGACTTGTTATTTCGATAG
GTGATATGGTTTTTTTTTTTTAAGTGAGACTGTATGTGTAAACAGGAGCT
ATTTGCCTCCCAGTGTGAGAAACGCTGAGCCCTTACAGCCTCCTCTGTGG
TCCATTGGGCCTCAAGTCTGATATGCTTCTATGGTGACAATGACCACCTA
TCCCAGTACTGTGTGCCCGTCTTTATGAGATGAATACCTGGTTTCTCACA
TCTGCCAACAATATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_f15.g1 MSMg01no063_f15.g1 CHROMAT_FILE:
MSMg01no063_f15.g1 PHD_FILE: MSMg01no063_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:40 2005
         (283 letters)



>mm_chr1_6810903_6811585
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagcctggtatttctctgtatttttagaggatatatttttctttgtttaagaacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agagagcctggtatttctctgtatttttagaggatatatttttctttgtttaagaacctc 424

                                                                       
Query: 61  atttgtttaaagattgttttgagtggattttggcaagcacctcttcctggggcttacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atttgtttaaagattgttttgagtggattttggcaagcacctcttcctggggcttacttg 364

                                                                       
Query: 121 gcttggctttttccagaagctaattctgattcttctgtcaaatgctcggtggcactgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 363 gcttggctttttccagaagctaattctgattcttctgtcaaatgcccggtggcactgtgt 304

                                                                       
Query: 181 tacctgctctcctgaaggcctggcacagcacaggcacgcagctgaccacacaaggacggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 303 tacctgctctcctgaaggcctggcacagcacaggcacgcagctgaccacacaaggacagg 244

                                                      
Query: 241 gttgcccttaaagggaaacgcctcggtttgcactgcataggtt 283
           | ||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 243 gctgcccttaaagggaaacacctctgtttgcactgcataggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)