CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CTCAGTACTAATAAGAAAAGAATAAGCCCTGAGCTCAGAACACATAAAGC
TACACTTTATGGCTTGTTCCTCTAGGGCCTCCAAATTAGTTAGAAAAAAA
TTCAAAACTAAATGCTTGCAGAATGATCATGTAATCTATCAGGAACTAGT
TTGTCCTCTCTGGGAAAATACATTCTTCATCTACGTTGGTATGAATAGGT
TGGACTCACTCTCTTCTTGCTACCATGCCTCCTACTTCAGCCACTTAGAC
TTTCTTTAAGCACAAGCTGACTCTGTTACCAGACCCACACAATTTCTAGG
GTGCCAACTGAGATTCCTGTCTTCTCAGGACCCAACATCAGCAGCACACG
AAGCTTGAGACCAGTACCCATAGTAAGCTGGGAAAGTCACTACATCTTTT
TGAGCTTCATTCAGTTTTAAACTTACAATGAAGAAATGAGCCCATATCTC
TCATTTGTGAGGGACAGCTCAAGAGCACTGTTAGAGTTCAAAGAAAAGGT
AGTAGGTGTGTACATAACTGTGCAGCACCTCTTTCAAACCTCCCCACAAC
CAACTATTATCTCCATAATAAATATAGGTAAACAAGATTTGGAGAGGCTA
AATACTTTGTAACACTGCTAACAAGTAGAGAAGTCACAATTAAAGCACA

CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGATCTGCTGAAATTTGAGTGTGGG
CATTGAAACTCTGCTGCCTTAGATGAGTGGTGATAAGAAGCAGAGCTCAG
GGGTAAAGTTTGCCTTTAGAAAATGACATGCTGGTGGGAGATGTTGATGT
AAAGATAGTCTAGCATGTATGAGGTCCTAGGTTTGTTTCCTACCCTGCAT
CACAAGAAGAAAGAAAGGGGGGAGATAGAAATGGTCATTAAAGGCAAAAC
TGGGGGTTAGAAATAAGTAAGAAGCAAAATATACCCACAACCCAACTGGC
TTATTCATATTTCATTAATATACTGTAATCAGCTCTAGAAATTACCATTA
ACCCCTTGTGGACATAATTTTAAAAGAGAATTGTAAGCTAGATTTTTTTC
AAAACCTACTTTTAATATGGGTTCTTAAATGTTTTAACCTCCCTTCTAGC
CCACCACCCACCAAAGATAGTAGAAAGAAAGGTTATAAGGATATGGGGGC
AAGTGAACCTGTTTAGAAATATTTTTATACCCTTTTATTAGATATTTTCT
TCATTTACAGTTCAAATGCTATCCCCAAAGCCTCCTATACCCCCCCACCC
TGCTCCCCAACCCACCCACTCCCACTTCCTGGACCTGACATTCCCTTGTA
CTGT

Query= MSMg01no063_f17.b1 MSMg01no063_f17.b1 CHROMAT_FILE:
MSMg01no063_f17.b1 PHD_FILE: MSMg01no063_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:41 2005
         (635 letters)



>mm_chr1_196592484_196593518
          Length = 1035

 Score = 1191 bits (616), Expect = 0.0
 Identities = 625/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctcagtactaataagaaaagaataagccctgagctcagaacacataaagctacac 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctcagtactaataagaaaagaataagccctgagctcagaacacataaagctacac 267

                                                                       
Query: 68  tttatggcttgttcctctagggcctccaaattagttagaaaaaaattcaaaactaaatgc 127
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 268 tttatggcttgttcctctagggcctccaaattagttagaaaaaaaatcaaaactaaatgc 327

                                                                       
Query: 128 ttgcagaatgatcatgtaatctatcaggaactagtttgtcctctctgggaaaatacattc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttgcagaatgatcatgtaatctatcaggaactagtttgtcctctctgggaaaatacattc 387

                                                                       
Query: 188 ttcatctacgttggtatgaataggttggactcactctcttcttgctaccatgcctcctac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttcatctacgttggtatgaataggttggactcactctcttcttgctaccatgcctcctac 447

                                                                       
Query: 248 ttcagccacttagactttctttaagcacaagctgactctgttaccagacccacacaattt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttcagccacttagactttctttaagcacaagctgactctgttaccagacccacacaattt 507

                                                                       
Query: 308 ctagggtgccaactgagattcctgtcttctcaggacccaacatcagcagcacacgaagct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctagggtgccaactgagattcctgtcttctcaggacccaacatcagcagcacacgaagct 567

                                                                       
Query: 368 tgagaccagtacccatagtaagctgggaaagtcactacatctttttgagcttcattcagt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgagaccagtacccatagtaagctgggaaagtcactacatctttttgagcttcattcagt 627

                                                                       
Query: 428 tttaaacttacaatgaagaaatgagcccatatctctcatttgtgagggacagctcaagag 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttaaacttacaatgaagaaatgagcccatatctctcatttgtgagggacagctcaagag 687

                                                                       
Query: 488 cactgttagagttcaaagaaaaggtagtaggtgtgtacataactgtgcagcacctctttc 547
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 688 cactgttagagttcaaagaaaagttagtaggtgtgtacataactgtggagcacctctttc 747

                                                                       
Query: 548 aaacctccccacaaccaactattatctccataataaatataggtaaacaagatttggaga 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aaacctccccacaaccaactattatctccataataaatataggtaaacaagatttggaga 807

                                       
Query: 608 ggctaaatactttgtaacactgctaaca 635
           ||||||||||||||||||||||||||||
Sbjct: 808 ggctaaatactttgtaacactgctaaca 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no063_f17.g1 MSMg01no063_f17.g1 CHROMAT_FILE:
MSMg01no063_f17.g1 PHD_FILE: MSMg01no063_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:41 2005
         (295 letters)



>mm_chr1_196652124_196652818
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggatctgctgaaatttgagtgtgggcattgaaactctgctgccttagatgagtggtga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 495 aaggatctgctgaaatttgggtgtgggcattgaaactctgctgccttagatgagtggtgg 436

                                                                       
Query: 61  taagaagcagagctcaggggtaaagtttgcctttagaaaatgacatgctggtgggagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taagaagcagagctcaggggtaaagtttgcctttagaaaatgacatgctggtgggagatg 376

                                                                       
Query: 121 ttgatgtaaagatagtctagcatgtatgaggtcctaggtttgtttcctaccctgcatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttgatgtaaagatagtctagcatgtatgaggtcctaggtttgtttcctaccctgcatcac 316

                                                                       
Query: 181 aagaagaaagaaaggggggagatagaaatggtcattaaaggcaaaactgggggttagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagaagaaagaaaggggggagatagaaatggtcattaaaggcaaaactgggggttagaaa 256

                                                                  
Query: 241 taagtaagaagcaaaatatacccacaacccaactggcttattcatatttcattaa 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 taagtaagaagcaaaatatacccacaacccaactggcttattcatatttcattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)