BAC Information

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BAC

Clone NameMSMg01-063G21
Chromosome1 (Build37)
Map Location 66,669,030 - 66,669,305
singlet/doubletsinglet
Overlap genenone
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063G21.T7 (MSMg01no063_g21.b1)MSMg01-063G21.TJ (MSMg01no063_g21.g1)
ACCAG289172AG289173
length782762
length of high quality
(start - end)
322 (130 - 451)276 (132 - 407)
definitionCHROMAT_FILE: MSMg01no063_g21.b1 PHD_FILE: MSMg01no063_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:47 2005CHROMAT_FILE: MSMg01no063_g21.g1 PHD_FILE: MSMg01no063_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNCCCCCC
CNNNNNNNNNNNNTTTTTNNNGGTTTGNNNNNNCTCTCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAAGAATGT
TGCCTACTCAGTGACATTCATATTTGCCTCTAGTATTGTTAGAGAGATAG
TGAAAGAAACCAGGCTTTACTATATACTACATAGAGTTAGAAATCTCAGG
GCAAGCTTAGCAATGTAAGTTATGTATGGCAGACTACATTACTTATTAGA
AGAAAGTCCCCCCACACTATCAGTTAGAATAAAAGCTAAGTCACTCCCAT
ATACAGGAATTTACAATGGTTTAGGAAGTAGATCGGGCTGTGGTTTTAGA
GTATTGCATTATTCATGAGATGGTTAGCTAGAGTGGAACTCCCTAATTAG
AACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGTAAAGACCTCA
CACCTAGCTTCTAAGACTATAGCTGACCTTAGATAGAGCTGACTTTGTCT
CAGTTGTTTTATTGCCCAGTTGCTGCCAGTCTTTGTGTTTGCATTCCTCT
GTTTTGCGTAAGAGTCATTAAGCATCCAGTAACCTCATTTGTACCTTGCC
GATGTGTCACCTAACTTCCCTATTTTCTTCTGTATAACAAGTTTGATATT
CATCTTGAAAAATTACATTCCTATCTCTAACACATCTCAAGTGTTGCTTC
TATTTTGCCATTCGCTTGGCGAATCCTTGTCC
NNNNNNNCCCCNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTTCTTTT
NNNNTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGCTATGCACTGTGGG
GTTGTGTTTTATGGATGTAAACAAGCCTTGGGTTGATTGTGCTGGTGAAA
TTCCCATGTAGATAGCATCTCTCACCTTAAAAATCTGCTGTGCTCCCTCC
TCCATCCTAGGCCAGACCTGATAGCGAAACCTCCAGAGAGTGTGAAACTT
GAGGACAGCATTCAGCCTCTGTACAGTCTCTGCATGATGGAACTCGGACA
TCAGCATGTCTGACACAGCATCGGGGACCTTCACAGCACACAACAGGAAC
ATGGCGGCTAAAAACAGTTTTTATTTAATCCCCCAGCTGCACATCTTAAG
GTGTTGTGTTGTTTCAGGGATTGCGCCAAAACAGATCTTCTATCTCCTTT
CGACCACTCTGGAGGTGAAGGAGGTTGGCCACCATTAATGCCCGAAGCTA
ATGACTGTTCAGACAATACACACCACCCAGTGAATGACGTTGTCCGTGAC
TTCTATCACCTAGTGTCAAATCAGGAACTACATGTACTTTCAAAATAAGT
GCTTCAAAAAAAAACTTCCCTTTGCCTCATTGAACAGTCCGTAACACCAA
CCAACACACGTTAATCTCCTAAAATGGCCTTTAATAAAATTATGGCTAGA
CCTCCCTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_g21.g1 MSMg01no063_g21.g1 CHROMAT_FILE:
MSMg01no063_g21.g1 PHD_FILE: MSMg01no063_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:47 2005
         (276 letters)



>mm_chr1_66668830_66669505
          Length = 676

 Score =  534 bits (276), Expect = e-156
 Identities = 276/276 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggctatgcactgtggggttgtgttttatggatgtaaacaagccttgggttgattgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 attggctatgcactgtggggttgtgttttatggatgtaaacaagccttgggttgattgtg 417

                                                                       
Query: 61  ctggtgaaattcccatgtagatagcatctctcaccttaaaaatctgctgtgctccctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctggtgaaattcccatgtagatagcatctctcaccttaaaaatctgctgtgctccctcct 357

                                                                       
Query: 121 ccatcctaggccagacctgatagcgaaacctccagagagtgtgaaacttgaggacagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccatcctaggccagacctgatagcgaaacctccagagagtgtgaaacttgaggacagcat 297

                                                                       
Query: 181 tcagcctctgtacagtctctgcatgatggaactcggacatcagcatgtctgacacagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tcagcctctgtacagtctctgcatgatggaactcggacatcagcatgtctgacacagcat 237

                                               
Query: 241 cggggaccttcacagcacacaacaggaacatggcgg 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 cggggaccttcacagcacacaacaggaacatggcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)