Query= MSMg01no063_h09.b1 MSMg01no063_h09.b1 CHROMAT_FILE:
MSMg01no063_h09.b1 PHD_FILE: MSMg01no063_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:50 2005
(311 letters)
>mm_chr1_33828661_33829371
Length = 711
Score = 571 bits (295), Expect = e-167
Identities = 305/309 (98%), Gaps = 2/309 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgatttactgaggtttagtagagtgagtatctgatacattttcagaggaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattctttgatttactgaggtttagtagagtgagtatctgatacattttcagaggaaat 331
Query: 65 ggcttataaaggcaaggaatggcattaaagatagaaacatagcaatctggataaagtgat 124
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggcttaaaaaggtaaggaatggcattaaagatagaaacatagcaatctggataaagtgat 271
Query: 125 ctaatgttatattaagtctagttctactgtcatattttttaacttttaaaaattcttgat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctaatgttatattaagtctagttctactgtcatattttttaacttttaaaaattcttgat 211
Query: 185 aatttcatatgtgtgtgtatgtgtgtacatatac--atatatatatatagtcatgtgtct 242
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 210 aatttcatatgtgtgtgtatgtgtgtacatatacatatatatatatatagtcatgtgtct 151
Query: 243 tactggcatgagtgtgggcgagaggttgtttagtgagcatggttagtcttagcactgact 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tactggcatgagtgtgggcgagaggttgtttagtgagcatggttagtcttagcactgact 91
Query: 303 acatcacta 311
|||||||||
Sbjct: 90 acatcacta 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_h09.g1 MSMg01no063_h09.g1 CHROMAT_FILE:
MSMg01no063_h09.g1 PHD_FILE: MSMg01no063_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:50 2005
(292 letters)
>mm_chr1_33703268_33703958
Length = 691
Score = 453 bits (234), Expect = e-132
Identities = 274/294 (93%), Gaps = 15/294 (5%)
Strand = Plus / Plus
Query: 1 caggacagccagaactacacagaaaaaccctgtctcaaaaaacaaacaaacaaacaaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 caggacagccagaactacacagaaaaaccctgtctcaaaaaacaaacaaac--------- 257
Query: 61 aaaacaaaacaaa--aa--aaggaaggaaggaaggaaagaaagaaaataaatagaaattt 116
||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 258 aaaacaaaa-aaaggaaggaaggaaggaaggaaagaaagaaagaaaataaatagaaattt 316
Query: 117 taaatttttttttaaatttaaaaaagaatggagacccctatgtgcatacacatgcgctgt 176
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 317 taaattttttttaaaatttaaaaaagaatggagacccctgtgtgcatacacatgcg-tgt 375
Query: 177 gccacaaaagaagtggcaaaaataaaagaagtgtaatcctttcaaggacatactaaaaaa 236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gctacaaaagaagtggcaaaaataaaagaagtgtaatcctttcaaggacatactaaaaaa 435
Query: 237 aaaaagagacgagacgagaggaaacgaggaggaaaaaaaaggtaacctatttta 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaaaagagacgagacgagaggaaacgaggaggaaaaaaaaggtaacctatttta 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space: 193006
Effective search space used: 193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
