BAC Information

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BAC

Clone NameMSMg01-063H15
Chromosome1 (Build37)
Map Location 115,922,445 - 115,922,762
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063H15.T7 (MSMg01no063_h15.b1)MSMg01-063H15.TJ (MSMg01no063_h15.g1)
ACCAG289208AG289209
length686678
length of high quality
(start - end)
310 (35 - 344)536 (58 - 593)
definitionCHROMAT_FILE: MSMg01no063_h15.b1 PHD_FILE: MSMg01no063_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:51 2005CHROMAT_FILE: MSMg01no063_h15.g1 PHD_FILE: MSMg01no063_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTTC
TTTGTTAGTTCTTTGTGTGGTTTGGGTATGAGAGTAATTGTGGCTTCATA
GAATGAATTGGGTAGAGTACCTTCTATTTCTATTTTGTGAAATTGGTTGA
GAATTAGAATTAGGGCTTTGTGGAAGGTCTGTTAGATCTCTGCCCTACCA
CATCTGGTTCTGGGCTTTTTTTTTCCTTTGTTTTTGTTGTTGTTGTTGTT
GTTAGGAGACTATTAAAGATTGCTTCTGTTTCTTTGGGGGATATGGGGCT
GTTTAGATTGTTTAGATCCTTAATCTGATTCTGATTTAAATTTGTTTTTT
GTTGCCCGCCCACCAACATTGTCCATTTCATTCAAGTTTTCCAGTTTTGT
TGAGCTTAACCTTTTGTAATAAGATCTGATGATGCTTTGGATTTCCTCAG
GTTCTGTTGTTATGCCTCCCTTTTAATTTCTGATTTTGCTAATTAGGATA
CTGTCCCTGTGCCCTCTTGTTTGTTTGGCTTACGGTTTATCTATCTCACC
GATTTTCTCATAAAACAAGCCTCTGGCTTGGTTGCCCCTTTCATTAGGTC
CTTCTTGTTTCCTACTTGCTGGCTCTTAGTCTTGCTCTTTGATTATTTTC
TTGCTAACTAATCCTCTTTCGGTTACTCTACTTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAAAGACCAAATCCCTCCCCCCCCCCACACACACACACACAAA
TAACAGACAGAGAGCAGGAAGCATGGCAAAACTATCAACTCTCAAAGCCC
ATTCCCTTTTGCTAGAAAGGAACTGTGTCTTAAAAGTTCCATAATATTCA
AAAACATACCCACCAAGTAGGAATCAAGTGTCCAAATAAAAGACTCCATG
GGGGACATTCATTCCAGACCACTTCAACATCTGAGTCTGGGTAATCTGTG
GCAGGGTTGGAGTTTCTATAAAGTGGCCCTCAGAGATGATGCTGTAAAGA
TGGAGCCCAAACTGTAGTAAAGACTCCTGGAAGCTGGAGGTGTCAGGAAA
TGTTTGATCTTGGTTTTTGTAGACAGGTTCACTCATGGCCAAGAGTTTAC
TTAAAGAATTAGGTCTTTAGGTCTCAGGTCTCAGGCAGCTTAATGTCTCC
TCTGCTATAGCACTGGATTTATAAGAACATGCCCTACATTCAGATGCTTG
TTGTTATTGTTGCTGCTGTTTTTTTTTTTACATTAGTTCTGGAGATCAGT
CTAAAGTTCTCTTGAATCTCATAGTGCTTTCTTTACTTAACACATTTGAC
CTATTTTAACAAGGCACTCTACTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_h15.g1 MSMg01no063_h15.g1 CHROMAT_FILE:
MSMg01no063_h15.g1 PHD_FILE: MSMg01no063_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:51 2005
         (536 letters)



>mm_chr1_115921825_115922762
          Length = 938

 Score =  514 bits (266), Expect = e-150
 Identities = 309/332 (93%), Gaps = 16/332 (4%)
 Strand = Plus / Minus

                                                                       
Query: 207 ccagaccacttcaacatctgagtctgggtaatctgtggcagggttggagtttctataaag 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 ccagaccacttcaacatctgagtctgggtaatctgtggcagggttggagtttctataaag 879

                                                                       
Query: 267 tggccctcagagatgatgctgtaaagatggagcccaaactgtagtaaagactcctggaag 326
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 878 tggccctcagagatgatgctgtaaagatggagcccaaactgcagtaaagactcctggaag 819

                                                                       
Query: 327 ctggaggtgtcaggaaatgtttgatcttggtttttgtagacaggttcactcatggccaag 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ctggaggtgtcaggaaatgtttgatcttggtttttgtagacaggttcactcatggccaag 759

                                                                       
Query: 387 agtttacttaaagaattaggtctttaggtctcaggtctcaggcagcttaatgtctcctct 446
           |||||||||||||||||          |    | ||||||||||||||||||||||||||
Sbjct: 758 agtttacttaaagaatt----------g----aagtctcaggcagcttaatgtctcctct 713

                                                                       
Query: 447 gctatagcactggatttataagaacatgccctacattcagatgcttgttgttattgttgc 506
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 712 gctatagtactggatttataagaacatgctctacattcagatgcttgttgttattgttgt 653

                                           
Query: 507 tg--ctgtttttttttttacattagttctgga 536
           ||   | |||||||||||||||||||||||||
Sbjct: 652 tgttttttttttttttttacattagttctgga 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 938
Length adjustment: 10
Effective length of query: 526
Effective length of database: 928
Effective search space:   488128
Effective search space used:   488128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)