BAC Information

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BAC

Clone NameMSMg01-063I09
Chromosome1 (Build37)
Map Location 178,815,700 - 178,815,981
singlet/doubletsinglet
Overlap geneSdccag8
Upstream geneExo1, Gm104, Pld5, B020018G12Rik, Cep170, LOC666235
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063I09.T7 (MSMg01no063_i09.b1)MSMg01-063I09.TJ (MSMg01no063_i09.g1)
ACCAG289244AG289245
length1,086743
length of high quality
(start - end)
---281 (136 - 416)
definitionCHROMAT_FILE: MSMg01no063_i09.b1 PHD_FILE: MSMg01no063_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:55 2005CHROMAT_FILE: MSMg01no063_i09.g1 PHD_FILE: MSMg01no063_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNTTTTNNNNNNNN
NNNNNNNNNNNTTTTNTTTTNNNNNTTNNNTNNNNNNCNNNNNNCTTTTN
TTNTNTAAATGTATAAATTGGAGGTTGTTGATAGGANTCATTTTCAGAAA
AGAGGAGGGNGNNGGAATNNNTTTTTGGCAAAAAAGAGGGAGAGGGGNGA
GAGGGAGTTGTTAGAGGTATGTGAGGTTGANNTGTTGTTGTTGGCAAAAA
AAAAGGAGGGGGGGGGGTTGAGGTATGGAGAAGAGGAAGAAAGGAATAGA
GGAGAAAAGGATAAAAGAGGGGTAGGAGGAATGATGGAAGANGTGTGATG
TAGGAAGAGGTGAAAGGTTGAGTAAGTATGGTATATGTGTGTGGTGGGGG
AGTGGTGTTGTGGGGGGGGGGGGAGAGGGGTGGAGTGGGGAGGGGGGGGG
GGAGGAAGGTGAAGAAGGGGTAGAAGGAAAGAGAGAATGTTTTTTTTTTA
GGAAGGTGGGAAGGAAGGAGAAGAGGGAGTAAATAGAATTATTTTATTTA
TAGAGAGAGAAGAAGGGGGAGTGATGATTGAGGAGGAGGAGAAGGTGGAG
GGTGTAGGGTGGTTGGAGTGTCGTGAAAGTAAGAGAAATAGAAGGGGGAG
AGGGAGAGGGGTGGTGAGGGGGGGAGAGGTATAGAATAGAGAAAGAAGAT
TATGAATAGAGATAAGGATGAGAATAAGAAAGAAGGAAGGATATAGGAGG
GAGAGTTGTAGGGAGGTGAGAGGGGATGAGTGAGGGGGGAGGGGAGTGAG
TGATATGGCGTGAAGAGNAGGAGAGGGTGGGGTGTGAGGAGATGATTTGG
AGGGAGATTGGGAGAGGAGTATAGGGAATAAGAGAGAGGGGAGGGGGGAT
GGGATGAATGAGGGGAGGTAATATGAAGGTAAATATATGAGAGGAGAGGG
GAAAGAGAGAAAGAAGGGATGATAGAGAATAGAGGAGAGAGAGGGTGAAA
GGAGGAGGGACGAGGATGAGAGGGGGAATGAGAGAGGGAGAGAGAGAGAG
GGGAATGAATCGTGAGTGGTGAGAGAAAGATGGAGG
NCCCCNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCNNNCGG
AATATNNNNCCACTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAATCTCAGT
TAGGCTGTGATAGGAACACAAATTTCTCTAAGTATGCTGAACACTGCTTG
AGGGCATACTTAGGGAAGCTTTATTACATCGCACACGTGGAACCAGATTC
TCCCTCGTGGGCTGCAGCCAGCGTGAAGTTCACACTACATTAATTTGCAC
TTGTCGATATGCTGCTTTGCAAGTATTCTTACGGCATGCTCAAATGCGGA
TTCTGAGTCCCCGGCTAGAATATAAACTCCCCAAGGGCAGGACCTGAACT
TGCAGTTATTTACCCCATAGTCTAGCACTCTGGCCTGGGTAAGCCATACC
CCCACAAGCTGTGCCGTATGACAGAGGAGAGGGGACAGGAATGTGTAACA
CTACAGCGCTGAAAGAGAGCGTGAAGAAGATGGCCCGCGGTGCTGTCATC
ACCAGGACCACGTGACTACATGTACCACAGCCATGCCCATGTGGCCCCCT
CCCAGGTACTCGGCATAGGTAGATACGTGATGTCGTCTCGGTAGTTTGGA
TAAGCCCCCTGAAGTCTACGCCTCAGACTTCCCCTTTATCTTCACGCTGC
TGGAACACATTGTTCAGCTTCATACCAGAGTACTGCTCGCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_i09.g1 MSMg01no063_i09.g1 CHROMAT_FILE:
MSMg01no063_i09.g1 PHD_FILE: MSMg01no063_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:55 2005
         (281 letters)



>mm_chr1_178815500_178816181
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%), Gaps = 1/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccag-aatctcagttaggctgtgataggaacacaaatttctctaagtatgctgaacac 59
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcccagaaatctcagttaggctgtgataggaacacaaatttctctaagtatgctgaacac 423

                                                                       
Query: 60  tgcttgagggcatacttagggaagctttattacatcgcacacgtggaaccagattctccc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgcttgagggcatacttagggaagctttattacatcgcacacgtggaaccagattctccc 363

                                                                       
Query: 120 tcgtgggctgcagccagcgtgaagttcacactacattaatttgcacttgtcgatatgctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcgtgggctgcagccagcgtgaagttcacactacattaatttgcacttgtcgatatgctg 303

                                                                       
Query: 180 ctttgcaagtattcttacggcatgctcaaatgcggattctgagtccccggctagaatata 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 302 ctttgcaagtattcttacggcatgctcaaatgcggattctgagtccccagctagaatata 243

                                                     
Query: 240 aactccccaagggcaggacctgaacttgcagttatttacccc 281
           |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 242 aactccccaagggcaggacctggacttgcagttatttacccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space:   183056
Effective search space used:   183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)