BAC Information

Click to search

BAC

Clone NameMSMg01-063I21
Chromosome1 (Build37)
Map Location 159,854,850 - 159,855,055
singlet/doubletsinglet
Overlap genenone
Upstream geneRalgps2, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063I21.T7 (MSMg01no063_i21.b1)MSMg01-063I21.TJ (MSMg01no063_i21.g1)
ACCAG289267AG289268
length772805
length of high quality
(start - end)
206 (204 - 409)201 (133 - 333)
definitionCHROMAT_FILE: MSMg01no063_i21.b1 PHD_FILE: MSMg01no063_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:57 2005CHROMAT_FILE: MSMg01no063_i21.g1 PHD_FILE: MSMg01no063_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCCCAANNN
NNNNNNNNTTTTNNCCTTTACATCTTCCTCATCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGAACACGTGGAGG
AAAAACACATGATAGAGACATTTTAAAACCAAGAAGAAAGATGCTATATA
CCCGTTAAAGAACATCCCACATAAAACTGAAAGGTAGCAACTGGTTATAA
TGGGAGGAAAAAGAGTAATCAAGTCATAGGGACATTTCAGTATGTCCAGC
ATCTGAAAAAAGAGAATGCACTTTACAAACAAAGGAGGCAGGAAAGGAGG
AGGAGGAGGGGGAGGAGCACACGGGGGAGGAGGAGGAAGAGGAGGGAGAA
ATAAAGAGATTCATTACCTGCAAAATTCATAATTTTCCATATTCTTCTTC
GATCCCCACCCAGTGATGAAACTATGCCTGCTCTGACACACACAGCTCTC
CACTTTTAACCCACTTATGACCACTCCAGTTCCTAAAGTTTACAGGATTA
ACCACCAATCAGGCGTAAATGTGGACAACATTCAAAACGTTCTTCCGATG
TATCTACATGACTCCCTGCCCCCTCTTTACTTTCTCGATGCCCGCCCTTT
TCTTCATCCACACCACCTTCCACCCTCCAACCCCTATACCGCCCCCATTC
TTACCACTTGACTTCATCTTTTATCTTCCGACCCCCTAAAAAAAACTGTC
ATCTCTTACCTGATAGCCCTTG
NNNCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNTTTTA
TTNNNATTCTATGATATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTATTATTCCTTTTTAT
TCATGTTTCTAAAAATGTGTTTTTGTGTCCCACAGTAAGGCATTAGAGGT
CTGTTTAAAATTATGTCTGTTTAGCAGAATAATTGAATAGGTTCTCATCC
TAGGGCCTATGACCTGTCTAACCCCAGGCCCCCCTCTCCCCCCATTCAAA
GTCTGGTATAAATAAGGCAGGAAGGAACTGTGGGATAAGGGATGATTGAT
TGACAGTGTGACCTCAAATGTATTTTGTCCAAGACATGAAAGATACAAAA
TTAAAATATATTTCTGTTTTTTGGCCCACCCCCTGGCAGATAGTGCAACT
CTCTTACATTTCTCTTTAGCGTTTACATCTTATTAACAACAAGAAGCTCA
TTAGGGGTCGTCCCCACACTAACGAATTAACTCTAATCAAGTCTCCTTTG
GTATGCTAATAGATATATTAATTTTTGTAAAAAGACTCCAGCTTGGTGTA
CGCAGTAGCGTAAACATATTCGTTCCTAAATAGAGATTCTGGCTACTTAC
TCCTTGGCTCTTAATATTTGATTGCATACCTCTTTGCTTTAATCACTACT
TCACTCCATTACTGCCGCACCTATTATATTATCGCGTTTTCCTTAACATG
CGCAAACGGATTTCTCCGGAATTTAAGTTTTGGTTTTCACCAAATACAAA
TATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_i21.b1 MSMg01no063_i21.b1 CHROMAT_FILE:
MSMg01no063_i21.b1 PHD_FILE: MSMg01no063_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:57 2005
         (206 letters)



>mm_chr1_159854715_159855320
          Length = 606

 Score =  391 bits (202), Expect = e-113
 Identities = 205/206 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttaaagaacatcccacataaaactgaaaggtagcaactggttataatgggaggaaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 341 gttaaagaacatcccacataaaactgaaaggtagcaactggttatgatgggaggaaaaag 282

                                                                       
Query: 61  agtaatcaagtcatagggacatttcagtatgtccagcatctgaaaaaagagaatgcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agtaatcaagtcatagggacatttcagtatgtccagcatctgaaaaaagagaatgcactt 222

                                                                       
Query: 121 tacaaacaaaggaggcaggaaaggaggaggaggagggggaggagcacacgggggaggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tacaaacaaaggaggcaggaaaggaggaggaggagggggaggagcacacgggggaggagg 162

                                     
Query: 181 aggaagaggagggagaaataaagaga 206
           ||||||||||||||||||||||||||
Sbjct: 161 aggaagaggagggagaaataaagaga 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)