Query= MSMg01no063_k04.b1 MSMg01no063_k04.b1 CHROMAT_FILE:
MSMg01no063_k04.b1 PHD_FILE: MSMg01no063_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:04 2005
(580 letters)
>mm_chr1_168916790_168917769
Length = 980
Score = 1079 bits (558), Expect = 0.0
Identities = 570/574 (99%)
Strand = Plus / Plus
Query: 7 gaattcatataactgctgattctctgtgaactgaaagactcaaagcctctgagacacagt 66
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatataactgctgattctctgtaaactgaaagactcaaagcctctgagacacagt 266
Query: 67 tccccattactggtcccagtgctgggctgtggtcctattttaagatacaatcaattgtgc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tccccattactggtcccagtgctgggctgtggtcctattttaagatacaatcaattgtgc 326
Query: 127 ttcgaacattttagggaaacagcatggatttctccatgcagctctgcgggagggctgtga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcgaacattttagggaaacagcatggatttctccatgcagctctgcgggagggctgtga 386
Query: 187 aatagaattgccatgtgtcgcccgctcctggcttgtctcgctttggtgcaggattctggg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatagaattgccatgtgtcgcccgctcctggcttgtctcgctttggtgcaggattctggg 446
Query: 247 tgctgccctcactttccccagaaagtgtgaacactaatgttatttcacctccactgtggg 306
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 447 tgctgccctcactttccccagaaagtgtgaacattaatgttatttcacctccactgtggg 506
Query: 307 ggatacttactgaactgatccaggtaaaattagcttctagtcttgtcaatacaatactta 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggatacttactgaactgatccaggtaaaattagcttctagtcttgtcaatacaatactta 566
Query: 367 atttgaggagaacctcaggttttctctttcccttctgtattatttttttcctgtatctac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atttgaggagaacctcaggttttctctttcccttctgtattatttttttcctgtatctac 626
Query: 427 tgctcatttcttttattataatgtgttttgggttttctttctgttcataaatcaatagtt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgctcatttcttttattataatgtgttttgggttttctttctgttcataaatcaatagtt 686
Query: 487 tgcagcagtaataaaatataattacatacatcaatgctaaaggttcacagagattgccgc 546
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 687 tgcagcagtaataaaatataattacatacatcaatgctaaaggttcgcagagattgctgc 746
Query: 547 tcttacattgtatttacttggcctagactgaagt 580
||||||||||||||||||||||||||||||||||
Sbjct: 747 tcttacattgtatttacttggcctagactgaagt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_k04.g1 MSMg01no063_k04.g1 CHROMAT_FILE:
MSMg01no063_k04.g1 PHD_FILE: MSMg01no063_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:04 2005
(538 letters)
>mm_chr1_168988943_168989880
Length = 938
Score = 971 bits (502), Expect = 0.0
Identities = 525/536 (97%), Gaps = 6/536 (1%)
Strand = Plus / Minus
Query: 1 tattcttcctgggccagcaatacatggatgatgctctcacaatgctggcctggagagtgg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 690 tattcttcctgggccagcaatacatggatgatgctctcacaatgctgggctggagagtgg 631
Query: 61 cagtgagcaacctcagggtgaatatctgaccatctatggtctaccacgctgctgagccaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 630 cagtgagcaacctcagggtgaatatctgaccatctatggtctaccacgctgctgagccga 571
Query: 121 gctgctcagtaggttagatgcgtcaaatgcttttaaagaaacttacaatacacccagaat 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gctgctcagtaggttagatgcatcaaatgcttttaaagaaacttacaatacacccagaat 511
Query: 181 ggttttatcagagctctgagaagatggttcatttggtagcttgccactggacttgaggtc 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggttttaccagagctctgagaagatggttcatttggtagcttgccactggacttgaggtc 451
Query: 241 agatccctagcacacaagagcacccatggtgcatagtgacattctagctggatcagcaag 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agatccctagcacacaagagcgcccatggtgcatagtgacattctagctggatcagcaag 391
Query: 301 ctttggatttggtcagagactttgtcacaaaaaatagggtggagggctggcaagatgggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctttggatttggtcagagactttgtcacaaaaaatagggtggagggctggcaagatgggg 331
Query: 361 cagagtttacaacttggtgacctgagtttgaccactggaacccatggcaaaattgtcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cagagtttacaacttggtgacctgagtttgaccactggaacccatggcaaaattgtcttc 271
Query: 421 tggctcgcacatgcatatcactgcacatgtgtgtcttccaatgtgcacaaataagcacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tggctcgcacatgcatatcactgcacatgtgtgtcttccaatgtgcacaaataagcacac 211
Query: 481 acatacacaaatatatatatatatatatgtatatatgtatgtatatatatatatat 536
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 210 acatacacaaatatatatatatatatat------atgtatgtatatatatatatat 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
