XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATAC
ATTACTGAAAATTCTATAATAGCCTTTTTCCATTGGTTAAAAAAATGGGA
TAATCAATATCCTGATCCTTGCATGCATACCAATATTAGTAGTTTACAAT
GATTTTAGCATTCTGCCCATGCTGTTATTTATAAGATATCATAAAGCAGA
TTTTTAAAGGGAATACTTATCAGACATATTTACATCAAAGGAACTATATT
ACATTATTTTTTTAACTCCTACTATCTTTAAAGATAGATAACTATGAGAT
TTTTTAATGACCTTTAGTGACTTCATACTATTTTCTGTCTGCAATCTCTT
GTCTATGTCTCTCAAGAAACCTTCTCTTATCCCAGGGGAATATATTTCAA
GATTCTCAGTGGCAACAGCCTGTATACGCACGCGCACACACACACACACA
CACACACACATGAGTTCAATGTGCTGCTATCAATTAAATTAAAACACATA
ATCTATTCATATCTTTTATTTTCATATAGCATAAAAGCTAGTAAGAGTTT
ATAAACCTTCTATCATTCTTAGTTTTGATGGGCTCTTCTTCTATTTCTTC
ATTCTTCATCTCAGTCCCGTCCTTTTAAAACCACAGCACCCAGTATTTCC
CACTGTGTTTTCATATCACATGGGTTTTATCCTTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATCAGAGGAATGGAGGAATGTCGAA
TGGCTGAGAAGTACTTAAATACATGTTCAAAGTCCTTAGTCATCATGGAA
ATGCAAACCAAAACAACTCTAAGATTCTACCTGACACCAATCAGAATGTC
TGAGATCAGTCCTTGGTGCCCTCCCATGAGATAGATCTCAAGTTGGGTCA
GTGATTGGACTGCCTTTCCTTCAGTTTCTTCTCCATTTTGTCCCTGTAGT
TCTTTTAGACAGGAACAGTTCTGGGTTAGAAATTTAGGCTGTGGTTTAGT
AACCCTGTCCCTTTGCTTAAGGCTCTGTCTAGCTCCTAAAATTAGAGTCT
TCTAGTTCCCTTTCCCAAGTGTTGAGCATTTTGTCTAAGGTTACCCCGAT
TTAGTCTTTAGAGTCTGATGCCTCCAAGGTCTCTGGTACTTTTAGAGAGT
TCCCCATCATGCCCGGGAACTACTTATTTCCATTCATTCTCTTGGCCCTC
TGTGCTTCTTTCCTGCCCCTCCTCCATACCTAATCCTGTTTTCCCCCCAT
TTTTCAACCATGTTCATAGCAGCCTTATTTGTAATAGCTAGAATCTGGAA
ACAACCCAGATGTCCCTCAAAGGTTACAGAAATGGATACAGAAAAT

Query= MSMg01no063_k06.b1 MSMg01no063_k06.b1 CHROMAT_FILE:
MSMg01no063_k06.b1 PHD_FILE: MSMg01no063_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:04 2005
         (629 letters)



>mm_chr1_100395632_100396661
          Length = 1030

 Score = 1015 bits (525), Expect = 0.0
 Identities = 567/591 (95%), Gaps = 17/591 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatac-attactgaaaattctataatagcctttttccattggttaaaaaaatg 62
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggaattctatacaattattgaaaattctataatagcctttttccattggttaaaaaaatg 532

                                                                       
Query: 63  ggataatcaatatcctgatccttgcatgcataccaatattagtagtttacaatgatttta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ggataatcaatatcctgatccttgcatgcataccaatattagtagtttacaatgatttta 472

                                                                       
Query: 123 gcattctgcccatgctgttatttataagatatcataaagcagatttttaaagggaatact 182
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 471 gcattctgcccatgctgttatttataagatatcataaagcagattttttaagggaatact 412

                                                                       
Query: 183 tatcagacatatttacatcaaaggaactatattacattatttttttaactcctactatct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tatcagacatatttacatcaaaggaactatattacattatttttttaactcctactatct 352

                                                                       
Query: 243 ttaaagatagataactatgagattttttaatgacctttagtgacttcatactattttctg 302
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 351 ttaaagatagataactatgagattttttaatgaccaaaagtgacttcatactattttctg 292

                                                                       
Query: 303 tctgcaatctcttgtctatgtctctcaagaaaccttctcttatcccaggggaatatattt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tctgcaatctcttgtctatgtctctcaagaaaccttctcttatcccaggggaatatattt 232

                                                                       
Query: 363 caagattctcagtggcaacagcctgtatacgcacg----------------cgcacacac 406
           |||||||||||||||||||||||||||||||||||                | |||||||
Sbjct: 231 caagattctcagtggcaacagcctgtatacgcacgcacacacacacacacacacacacac 172

                                                                       
Query: 407 acacacacacacacacacatgagttcaatgtgctgctatcaattaaattaaaacacataa 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 acacacacacacacacacatgagttcaatgtgctgctatcaattaaattaaaacacataa 112

                                                                       
Query: 467 tctattcatatcttttattttcatatagcataaaagctagtaagagtttataaaccttct 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 111 tctattcatatcttttattttcatatagcataaaagctagtaagagtttataaactttct 52

                                                              
Query: 527 atcattcttagttttgatgggctcttcttctatttcttcattcttcatctc 577
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  atcattcttagttttgatgggctcttcttctatttcttcattcttcatctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space:   631380
Effective search space used:   631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)