Query= MSMg01no063_l19.b1 MSMg01no063_l19.b1 CHROMAT_FILE:
MSMg01no063_l19.b1 PHD_FILE: MSMg01no063_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:13 2005
(282 letters)
>mm_chr1_11762970_11763651
Length = 682
Score = 460 bits (238), Expect = e-134
Identities = 269/282 (95%), Gaps = 6/282 (2%)
Strand = Plus / Plus
Query: 1 atgtgtttgtcaagatgggtgtcttggggacatcatcttcaagtgcgggtattgatggac 60
||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 atgtgtttgtcaagacgggtgtcttggggacatcatcttcaagtgtgtgtattgatggac 260
Query: 61 tttgcaggtagtttttggaggataataatggttagcaagggcatggcactggagccttcc 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggaggtagtttttggaggataataatggttagcaagggcatggcactggagccttcc 320
Query: 121 ttggatgactttataagaagaacaggtctggagagataggtcagtagataagagctctgt 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggtgactttataagaagaacaggtctggagagataggtcagtagataagagctctgt 380
Query: 181 ttgttcttccagaagactggggttcggttctcaacatctctatggtagctcacaactgtc 240
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttcttccagaggactggggttcgattctcaacatctctatggtagctcacaactgtc 440
Query: 241 tgtgactgtgactccagtcccagatgatctggcatcattttc 282
||||||| || |||||||||||||||||||||||||||
Sbjct: 441 tgtgact----ct--agtcccagatgatctggcatcattttc 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no063_l19.g1 MSMg01no063_l19.g1 CHROMAT_FILE:
MSMg01no063_l19.g1 PHD_FILE: MSMg01no063_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:13 2005
(146 letters)
>mm_chr1_11907122_11907667
Length = 546
Score = 228 bits (118), Expect = 1e-64
Identities = 139/146 (95%)
Strand = Plus / Minus
Query: 1 aatatatgagtctggggtggggactaggattggagagtggagggtgggggacattattat 60
|||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct: 346 aatatatgagtctggggtgggggctgggattggagagtggagggtgggtgacattattat 287
Query: 61 tcaagggatcacagatttgaaacgtttttgtaatacaatgaagttttttggagaaaattt 120
||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 286 tcaagggatcacatatttgaaaagtttttgtaatacaatgaagtcttttggagaaaattt 227
Query: 121 aaggataaatggaaagtggactagta 146
||||||||||||||||| ||||||||
Sbjct: 226 aaggataaatggaaagttgactagta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space: 74244
Effective search space used: 74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
