BAC Information

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BAC

Clone NameMSMg01-064B08
Chromosome1 (Build37)
Map Location 134,129,351 - 134,129,658
singlet/doubletsinglet
Overlap geneLemd1
Upstream geneRassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221
Downstream geneEG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064B08.T7 (MSMg01no064_b08.b1)MSMg01-064B08.TJ (MSMg01no064_b08.g1)
ACCAG289655AG289656
length727726
length of high quality
(start - end)
310 (45 - 354)---
definitionCHROMAT_FILE: MSMg01no064_b08.b1 PHD_FILE: MSMg01no064_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:44 2005CHROMAT_FILE: MSMg01no064_b08.g1 PHD_FILE: MSMg01no064_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACACTGGACTCTCTCTCCCGCCTTCTTTTTCTGACCTCTGTCCA
TTACTATGTTGAGGCATCTCCTTGGTGCCTCTGATTTTTGGCTTCTTGGC
TTCCCCACTCCAAGCAAGGGGCTGTTGCTTCTTGACTGCTGTCTTGCTCG
CTAAATAAATGTCCTCATGCTCGAGACCTCCGGCTTTAGCCATCTTTTTT
TCATTTTTTTTATGTGGCTTCTTCCTCTTGTTACCTCCTCCTGTGCTAAC
CCCTCCAAGACCCTCCTCAGGTATAGGCCTGTGTCAAGTTGATTTATTCC
TTCATATTTTCCAACCTTCCCTCCGCACTGCATCCACTCAACAAAAGGCC
CCCTCACGGGCATGAGAACTTTGAAGATTGGAGGGATGCGTTTACACCTT
GCTACGTGGCTGCCCCCTGCTACTGAGTACAGGATAGACATCAGGAGCAA
ACACATCCCCATGCCGATCTGGCCACACAGATGACCGTCGCTGCCCAGGC
CCAAAGCTCCAGACCTCTTGTGGAATACCCACTTCTCAGAGCAGTGTATA
CATAGAGGTTTATATATTCTTAAGATTAGAATTCTGACGTAAACCTATTC
CAGGCAGAGTTAGGTGGTCTGTACCTTTAATCTCAGTGCTCAGGAGGCTG
AAGCAGGAGAATAGTGAGGTCTGTATT
NATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACATAAAGTTTTGGATATGC
CCTTCAGGGGATAGGAACTCACAGGAAGACCAACAGAGCCAACTAACCTG
GACCTTTGGAACTCTTAAAGTCTGAGCCACCAACCAAAGAACATATGCAG
GTGGGCAGCTTGGCCTTCATGTGGGTCCCTAACAATTGGAGTCGGGGCTG
TCCCAAAAGTTGTTGCCTATACATGGGGAATGTTTTCCTAGTTGGGCTGC
TGTGCCTGGCCTCAGGAGAGGATGCACTTAGCCTCACAAAGACTTGATGG
GCCAGGGTGGGGAAATATTTATGGGGCCCCCCCCCGCTCAAAGGAAAAAG
GAAGGGACCAAGGAAAGAATTGCGCCCAGGGAAAACAAAAAGGGGGCAAT
GAGCGGGGTGTAAAGTGAATAAGTAAAATTATAATACATTTGACATGACT
AACAGGCTTCCCACTATACCATACTTAGTTATAATAAATAGATGTACCAA
ACCTAAATGAGATATTCTACTCCTAAATACCAAACATAGCCCTCTTGCTT
TGCAAGCCTGCACAGGTTCGCCCTACCTTACGTACACATACATACTCGGC
GTTCGCGTTTTCCCCCCGCTATACACAACATTATGACATACCTTCCCTCC
AATCCCTTACAGTCAACTTTCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_b08.b1 MSMg01no064_b08.b1 CHROMAT_FILE:
MSMg01no064_b08.b1 PHD_FILE: MSMg01no064_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:44 2005
         (310 letters)



>mm_chr1_134129148_134129858
          Length = 711

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcacactggactctctctcccgccttctttttctgacctctgtccattactat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcacactggactctctctcccgccttctttttctgacctctgtccattactat 263

                                                                       
Query: 64  gttgaggcatctccttggtgcctctgatttttggcttcttggcttccccactccaagcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttgaggcatctccttggtgcctctgatttttggcttcttggcttccccactccaagcaa 323

                                                                       
Query: 124 ggggctgttgcttcttgactgctgtcttgctcgctaaataaatgtcctcatgctcgagac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggggctgttgcttcttgactgctgtcttgctcgctaaataaatgtcctcatgctcgagac 383

                                                                       
Query: 184 ctccggctttagccatctttttttcatttttttt-atgtggcttcttcctcttgttacct 242
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 ctccggctttagccatctttttttcatttttttttatgtggcttcttcctcttgttacct 443

                                                                       
Query: 243 cctcctgtgctaacccctccaagaccctcctcaggtataggcctgtgtcaagttgattta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctcctgtgctaacccctccaagaccctcctcaggtataggcctgtgtcaagttgattta 503

                   
Query: 303 ttccttca 310
           ||||||||
Sbjct: 504 ttccttca 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 711
Length adjustment: 9
Effective length of query: 301
Effective length of database: 702
Effective search space:   211302
Effective search space used:   211302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)