BAC Information

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BAC

Clone NameMSMg01-064D08
Chromosome1 (Build37)
Map Location 19,577,327 - 19,577,644
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064D08.T7 (MSMg01no064_d08.b1)MSMg01-064D08.TJ (MSMg01no064_d08.g1)
ACCAG289747AG289748
length724742
length of high quality
(start - end)
322 (45 - 366)180 (138 - 317)
definitionCHROMAT_FILE: MSMg01no064_d08.b1 PHD_FILE: MSMg01no064_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:57 2005CHROMAT_FILE: MSMg01no064_d08.g1 PHD_FILE: MSMg01no064_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCCATTGGTTTATCGCAGGGATTGTAAACTCTAAAAACTTATCA
TGATTCCTAGAACACAGGAAGACCTTGATTCATCAGTATTATTCATTATC
CCTTTATGCTTTGAAATGATAAGCTGATTCTACTATTAAAATGTCTAATC
CATGTCATTAATTGCAATAAAATCTTATGCAATGATCTCCATTTCTACAT
ATGAGAAAAGTCAAGAACTGGACTATATTGTGAAAAATGGAACCAAAAGT
ATGCACCATCGCTTACTCAGAATTACTTCCTGCCTAAGGACATTCTGCTA
CCAAGTGAATTTTTACCGACCGCCCCTCCTTCTCTGTTTAGCATCATAAA
ATCAAAGAACTTTACAACCACAATGAGACATGTGCTCATTTATTATAGCA
CTATGGAATTTCATAAAAACTTTGCAGTATGTTTTGTGAATGATCCCCCC
TTCTTCCTCATGAACATTTTTGCTTCTTTTATCTCAGTTACCAGCATTCT
GTAGGTTGAAATACCTTAAGCTAAATAACCAACGATGGTAAGACACCAAG
GTGTACAGTCTTTGAAGAAAAGTTCACTGGAATTTCTGGAGGGCAGTGCT
CCCATCTGTGGCTTCAGTTCTGTCACTTAGACTAGACTCTTGGGCAAGAT
ATACTCCACATCTCATATACCACC
AATGACAGTGCGTAGCCTGGCGGCCCGCCGGCCCGCCAAATTAAGGGAAA
CAAAAAAAGAACCCCGGAAATCCTTCCTTCCTCCCTCCTTCCCTCCCTCC
CTCCCTCCTTCCCTCCTTCCTTCCCTCCTTCCCTCCTGGCCTTCCTTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
TTTAAGGAATTTCCTCCCTTAAATTTTCCAAGGCCACCCAAAAAGCCCCC
TAAAACCCCCATTTTTTTTCCACCCCCCCCCCCCAATTTTTTGTCCTGGA
GGTCCCCTGGAACGAACCCCCCAAAAAAAAAAAAAACCAACGGCCCCCTC
TTCCAAAGAAGGCCTAACAAGCCATCCTCCGAAAACAAGCCACTAAAAAA
ATTAACCTCGGCGGGCGGTTAGAACGGTTAATTCACCAAGGCGGTCCATC
CAAAAAGATTTCAAAGGCCCCCCCCCCAAACCCTGGTAAACCTTACCAAA
TTCCCCCCCGGGCGCCAACCCGATTCCACCATTCACCTCACTTCACTCCC
TTCCTCCTTTTTTCCCTACTTCCCCCCCAATTTCCCCATAAAAATACCAC
ACCTGCCCCTCCCATTACCCACCAATCCCACATTTACATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_d08.b1 MSMg01no064_d08.b1 CHROMAT_FILE:
MSMg01no064_d08.b1 PHD_FILE: MSMg01no064_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:57 2005
         (322 letters)



>mm_chr1_19577123_19577844
          Length = 722

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcccattggtttatcgcagggattgtaaactctaaaaacttatcatgattcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcttcccattggtttatcgcagggattgtaaactctaaaaacttatcatgattcct 463

                                                                       
Query: 65  agaacacaggaagaccttgattcatcagtattattcattatccctttatgctttgaaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agaacacaggaagaccttgattcatcagtattattcattatccctttatgctttgaaatg 403

                                                                       
Query: 125 ataagctgattctactattaaaatgtctaatccatgtcattaattgcaataaaatcttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ataagctgattctactattaaaatgtctaatccatgtcattaattgcaataaaatcttat 343

                                                                       
Query: 185 gcaatgatctccatttctacatatgagaaaagtcaagaactggactatattgtgaaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gcaatgatctccatttctacatatgagaaaagtcaagaactggactatattgtgaaaaat 283

                                                                       
Query: 245 ggaaccaaaagtatgcaccatcgcttactcagaattacttcctgcctaaggacattctgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggaaccaaaagtatgcaccatcgcttactcagaattacttcctgcctaaggacattctgc 223

                             
Query: 305 taccaagtgaatttttac 322
           ||||||||||||||||||
Sbjct: 222 taccaagtgaatttttac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)