BAC Information

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BAC

Clone NameMSMg01-064D09
Chromosome1 (Build37)
Map Location 152,615,999 - 152,616,736
singlet/doubletsinglet
Overlap genenone
Upstream genePla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
Downstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064D09.T7 (MSMg01no064_d09.b1)MSMg01-064D09.TJ (MSMg01no064_d09.g1)
ACCAG289749AG289750
length1,222730
length of high quality
(start - end)
751 (28 - 778)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no064_d09.b1 PHD_FILE: MSMg01no064_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:58 2005CHROMAT_FILE: MSMg01no064_d09.g1 PHD_FILE: MSMg01no064_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTCACTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCAG
AATGTTCCCATGGTGGTTGCATGGTACCCTACCCACTCCTTAGCTGTTTG
AAGGTCAGAGATTAGTGTGAGGCCCAAGCTTTTCAGATAAGTAGCCTACT
TTGTGAACAAGACTTTCCATGTGAATTACAAAGGAGTCACCCATAACTTT
CTGGAGTGTTACTGCCATCATTAACTACCAAGCTACATAAACACTGACTT
TTTATTTAACTGCTAACTGAATTTGAAGTTGTATATTTATCAAACTGGAA
ATTCAAAGATTTGATTATTTCCAATAAGTAAAATTAGCTTACAGTCACTA
AAATAAAACCAGACTATATTTTTTAATTAGTATCAAGGACAACAGATCCA
TTAAAAGCTTTGAGCATTTTGAAAAGCACAGAAATGGCATTATCCCTTAT
TTTCTCCCCCCACTTTTGATTTATAGTATTTAAAAATATTTTTTATATAA
AGCCTTTGTCTTTTCACCTCATGTTCCCTAAGTTTGAACCCATTGTGAAT
TCATAATTTTGTGATTATGACATCAACCTGTTGCTATGGGAATGTCTATG
ATTTAACAAACAGAATCATAACAACAGGACTTTGTGCTACTTAGCATTTT
TCATCTGAAGATTAAAAAAAGTATTTTTGCAAACAGCATCTCGATAATCC
TAGCAACCTCCCTTCTAGAATGCCTACAGCATTTTCTTTGCTTTTATCAT
CAAAAGCTAAGGGGGAAGCAAAAGCTGGGGTTTGTACACAGATGCCAATT
ATCAGCATCCGTGCTTGGACCAAGTTTCCCTAAGACCCAAGAGAGCACTG
CTGGGTTTGGGTTATAGAATCACGGGTATTATCTATACTTTATAATGTAT
ATGTCCGTTTAATACTTGATGGGAGGTAATATATTGAAACCGAACCCAGA
ACTTCCGTTATCCCTCATTTTCCTGGAACCCCCATGTGCCTCTGCTTTTG
AACCCTCTTCCTAAAGCTTTCCTTGAAGGCCTTGGCTTTTTTAAACGGGG
ACCCCTCCCCCCTTATGAAAAATTGATTAATACCCTCGGAAAAATATTTT
TAACGCTCCTGGTATATTCTTGGTACAATTCTCTCCAGATGAAACATTCT
CTTACTTTNCTTATAAATATTCTCCCTCCTCTTATCAAATCACACCACTC
TCTCCTCTCCTTACTTTTATGT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGAATTCTCAGAGGGTATATAAAT
GCTAGGGCCCTGAGAGGTGGGTAGTTGCTGGTCATCTAGGGAAGATGGTT
GTTAGTAGCTGTGGTCAGAGAAGAAGCAAAAGGAAAGAAGTTAGATTAAG
TGATCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT
CTCTCTCTTTCTGTGTATCTCCTCTCTATCCTTCTTTTTCTCCTATCTAG
TCTTAGGGGGTGAAACTGTGAGGAAAAAGGGTGGGAAAATGAAGAACCCG
CAAATTATTAAAGACCACCTTCACCATGTATGTGTGTGTCCATGTATTTG
GTATGTGCACCGCAGTGTGTGTGCCTGATGAGGCCAGAAGAGAGTACTGG
AGGCCCTAGAGCTGGTTGCTGAGAACCCTCCAAGGTGGGTGCTGGGAACT
GAACTTGGGTATCCTTTAAGAACAGTACATATTGTTGACCACTGAGTCAT
CTCTTCAGCTCTAGACTTTTCACTTTAGGTAAAAAAAAAATTTGATTAGA
TATGATTATTTTGGAAGCAAGCATTCTCATCTTCCGAGACACTATATTAT
GGAAAAAAGTTATTTTCCCATCCGTACTAACACAACTTTAGGTCAACATA
CTGACATTTTCATAACCTTCTTGTCATGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_d09.b1 MSMg01no064_d09.b1 CHROMAT_FILE:
MSMg01no064_d09.b1 PHD_FILE: MSMg01no064_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:58 2005
         (751 letters)



>mm_chr1_152615786_152616936
          Length = 1151

 Score = 1323 bits (684), Expect = 0.0
 Identities = 725/740 (97%), Gaps = 6/740 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaatt-cagaatgttcc-catggtggttgcatggtaccctacccactccttagctgtttg 73
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattccagaatgttccacatggtggttgcatggtaccctacccactccttagctgtttg 273

                                                                       
Query: 74  aaggtcagagattagtgtgaggcccaagcttttcagataagtagcctactttgtgaacaa 133
           | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 274 agggtcagagattagtgtgagggctaagcttttcagataagtagcctactttgtgaacaa 333

                                                                       
Query: 134 gactttccatgtgaattacaaaggagtcacccataactttctggagtgttactgccatca 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gactttccatgtgaattacaaaggagtcacccataactttctggagtgttactgccatca 393

                                                                       
Query: 194 ttaactaccaagctacataaacactgactttttatttaactgctaactgaatttgaagtt 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttaactaccaagctacataaacactgactttttatttaactgctaactgaatttgaagtt 453

                                                                       
Query: 254 gtatatttatcaaactggaaattcaaagatttgattatttccaataagtaaaattagctt 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtatatttatcaaactggaaattcaaagatttgattatttccaataagtaaaattagctt 513

                                                                       
Query: 314 acagtcactaaaataaaaccagactatattttttaattagtatcaaggacaacagatcca 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acagtcactaaaataaaaccagactatattttttaattagtatcaaggacaacagatcca 573

                                                                       
Query: 374 ttaaaagctttgagcattttgaaaagcacagaaatggcattatcccttattttctccccc 433
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || 
Sbjct: 574 ttaaaagctttgagcattttgaaaagcacagaaatggcattatcccttagtttctctcct 633

                                                                       
Query: 434 cacttttgatttatagtatttaaaaatat--tttttatataaagcctttgtcttttcacc 491
            ||||||||||||||||||||||||  ||  |||||| ||||||||||||||||||||||
Sbjct: 634 tacttttgatttatagtatttaaaa--atattttttacataaagcctttgtcttttcacc 691

                                                                       
Query: 492 tcatgttccctaagtttgaacccattgtgaattcataattttgtgattatgacatcaacc 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tcatgttccctaagtttgaacccattgtgaattcataattttgtgattatgacatcaacc 751

                                                                       
Query: 552 tgttgctatgggaatgtctatgatttaacaaacagaatcataacaacaggactttgtgct 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tgttgctatgggaatgtctatgatttaacaaacagaatcataacaacaggactttgtgct 811

                                                                       
Query: 612 acttagcatttttcatctgaagattaaaaaaagtatttttgcaaacagcatctcgataat 671
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 acttagcatttttcatctgaagattaaaaaaagtatttttgcaaacagcatctcgataat 871

                                                                       
Query: 672 cctagcaacctcccttctagaatgcctacagcattttctttgcttttatcatcaaaagct 731
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 cctagcaacctcccttctagaatgcctacagcattttctttgcttttatcatcaaaagct 931

                               
Query: 732 aagggggaagcaaaagctgg 751
           |||||||||||| |||||||
Sbjct: 932 aagggggaagcagaagctgg 951


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 751
Length of database: 1151
Length adjustment: 10
Effective length of query: 741
Effective length of database: 1141
Effective search space:   845481
Effective search space used:   845481
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)