BAC Information

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BAC

Clone NameMSMg01-064K01
Chromosome1 (Build37)
Map Location 140,308,179 - 140,308,510
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600
Downstream geneNek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064K01.T7 (MSMg01no064_k01.b1)MSMg01-064K01.TJ (MSMg01no064_k01.g1)
ACCAG290048AG290049
length1,2121,225
length of high quality
(start - end)
332 (133 - 464)100 (493 - 592)
definitionCHROMAT_FILE: MSMg01no064_k01.b1 PHD_FILE: MSMg01no064_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:41 2005CHROMAT_FILE: MSMg01no064_k01.g1 PHD_FILE: MSMg01no064_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACCTCTTTTNNNTACATTTGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCCAGGAGNCAGAGCTCTCTTAAAAACCCACCATTACA
AATGAGTGTGGATTACACCCTTTAACTCTTAGCATTAATTTTTCAAGATA
TTTAAATTTAATTCTTCTGAAAATTACTTTACAATTAAAGCCTTTTACTT
GCTTACTAGGTCTATCTCATAAAGCTCTGTTATTGAATATGTTTTAAAAG
AAAATATTTCTATGATGAATTATACCTAAGTGCGGAAATTTGCACAGATT
TGGAGGTTAGGGTTGATTTCAGTGCGGTTAGTTATCGGTTATTGTGTTGC
TGAAACACTCAAATGAATTAAATTTACAATCTTCCCCACATTTGCCCATC
AGGTCACCATTTGGTCTCCAGATGTCCCTGGTTTCTCTTTATATGAAAGA
TATTTCTGCTGCGGCATGCGCATATTGATCAATCTATTTTAAACTGCTGG
ATTTTGGTTCATCTGTGTTCACTAAACAATCTCTGTTTTTTTTCAAAACC
TGACATGGTCACTTCGATGGTCTAACTATTGAAGTTGGTGTCACTATTTT
TATGATAGTTATAATCTATAATAAAATCACTTTCTATTCAAAATGAACTG
TTCATAGGGCATGATGTTCTAAACACTACCCAATTGACCCTCATCCTCTC
TACATGTACACACAGAAGGAACTTTTCAAATTCTTGCTTCACAAGGCTGA
AACTGGGCATTAAGAAAATTAAATGCTCCCAGAAAAAACTTCATAGCTGG
GAATTGAACAAAGGTGACTGTACTATTAATGCTATATGACAATAGCTTTT
TCTTTAATGACAGTGATAATTGTGACCCAGCCCCGAGTCTTAGTCCGGAA
AGGAATGGGAAGTTTGTTTTGGAAAAGGTTAAAATTTTATAAATTGTAAG
CCCCAAATGGCCCCTTTTTTAAAAGTGCTTTTTAAAAATGGCTGTGTGGG
GGTTGTGTGCAATTCCCGCGCAAGTTGTTTCAAAAATTCCCGGGGAAAGA
CCCTCTTTTCCTCGGAGACAAATTATTACCCTCCCAAGGGTCATTTTTTT
AAAAAAAACGTCGGGAATTTATTTTCTATATCTTCGCGCCCAACGGGCAT
TTTACCAAAAACACCTCCTTATGGAAACTCCCTCTTTTTTATCTGTTCTT
CACAAAGTGTTN
NNTGGAGACGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGAGAAGGGCATTGGGAGGAAAACTCAAAGC
TGGAAAAGAGGAGAGGGAATAAAGACTAGAGAGAGAGGGAAGGGATATGT
TTCTCATGGGTAGGGAAAGTTACAATGACTCCCATTCATCGGTTCAACTA
TATGTTAATGACGTTTTAAAATCCAGAAATTGGGGGCACATGCCTTTAAT
CCCAGCAGTTCAGGGTCAAAGGCAGGCAAATATCTATAAATTTCAGGCCA
GTTGGATCTACAAAGGGAGTTCCAATAAAGCCAGGGCTACCCTGAAAAAC
CCTGTCTTGAAAAAACAATAACAACAACAACAACAACAACAGCATCAATG
ATTTTATTAAAAAGATAACATGCAAAGTATCTTCTCCAATCATATGATGA
TTTTTTTTTTCCCCCCCCCCTCCCTTGTATACGGCCACCTAAAAAAAAGA
AGGTTTTGTTGAAATCAAATAATTTATTAATTTAATTATAACTGTATAAC
TTTAAACAATGTGTTAAAGCAAAAAATATGAAGGATTAAAAATGATTAGA
GAAAAGTAAAACCTTACCATGCTATCTGGATGTGATATTAGTGCATTTTT
TGAGGATCGGTCTGTTGCTAAGTATTGAAATGCTAAATTCTATACCTGGA
GGTCTAGGCTTCAGTTTACAAGCTTTTGTTGTGCAAACCTTGTCCCTTGA
TTTAAAACTTTTGGTTAATTAAAATTGTCTACTGCAACTTACTGGGGGGG
ATTAGAGGTAGGTGGGTTTTTGATTTCCCTCTCCTCATTTGTTTATCTCA
TTTCTCCTCAATTTTCATGTCTAATACTATATCTCCCCTTTAACTTCATT
CCCTTTATCACCTCTCATCTCCTTAATTTCCTACCCTATTTCTTTTTCTT
TTTTTTACAACTTTACCCATTTTTACCTTATCTAAATCTTACTTATGTTT
CTATCAATTAACTCCTTCCTCACCATATTTTTTCATCTCCTATTTTTATA
ATCCTCTTCCCTTATTCCTCCTTTTTTTTTCTCATCCTATCTTTTTCTTT
CTCTTCACTTCCCAATTTTCTCTTCTTCTCATCTTTCTATTTTTTACTAC
CATCTCCTATATGATACTTTCTCTCTCTCCTCTCCATCTTTTTCTTTTAT
CTCCTTCTCCTATCTTCTACTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_k01.b1 MSMg01no064_k01.b1 CHROMAT_FILE:
MSMg01no064_k01.b1 PHD_FILE: MSMg01no064_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:41 2005
         (332 letters)



>mm_chr1_140307979_140308710
          Length = 732

 Score =  549 bits (284), Expect = e-161
 Identities = 320/332 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattaatttttcaagatatttaaatttaattcttctgaaaattactttacaattaaagcc 60
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cattaaattttcaagatacttaaatttaattcttctgaaaattactttacaattaaagcc 473

                                                                       
Query: 61  ttttacttgcttactaggtctatctcataaagctctgttattgaatatgttttaaaagaa 120
           ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 472 ttttacttgcttactaggtctatctcataaagctccgctattggatatgttttaaaagaa 413

                                                                       
Query: 121 aatatttctatgatgaattatacctaagtgcggaaatttgcacagatttggaggttaggg 180
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 412 aatatttctatgatgaattatacctaaatgtggaaatttgcacagatttggaggttaggg 353

                                                                       
Query: 181 ttgatttcagtgcggttagttatcggttattgtgttgctgaaacactcaaatgaattaaa 240
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgatttcagtgtggtttgttatcggttattgtgttgctgaaacactcaaatgaattaaa 293

                                                                       
Query: 241 tttacaatcttccccacatttgcccatcaggtcaccatttggtctccagatgtccctggt 300
           |||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 292 tttacagtcttccccacatttgcccatcaggtcaccaatgggtctccagatgtccctggt 233

                                           
Query: 301 ttctctttatatgaaagatatttctgctgcgg 332
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ttctctttatatgaaagatatttctgctgcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)