Query= MSMg01no064_k06.b1 MSMg01no064_k06.b1 CHROMAT_FILE:
MSMg01no064_k06.b1 PHD_FILE: MSMg01no064_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:43 2005
(423 letters)
>mm_chr1_52499702_52500525
Length = 824
Score = 748 bits (387), Expect = 0.0
Identities = 402/407 (98%), Gaps = 1/407 (0%)
Strand = Plus / Minus
Query: 16 gaattc-catattctggaccttaacagagtgagtctctttaagaataagttcaaattccc 74
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattcacatattctggaccttaacagagtgagtctctttaagaataagttcaaattccc 563
Query: 75 cacagggagaatgtgcttgcacccacaatggccatgaacgtgacccagtgagctgcatca 134
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 562 cacagggagaatgtgcttgcaccaataatggccatgaacgtgacccagtgagctgcatca 503
Query: 135 tataattgtctgatgagttgtagacatgaagcaacatttatgacaaaaggccttttccag 194
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 502 tataattgtctgatgagttgtagacatgaagcaacatttatgacaaaaggcctattccag 443
Query: 195 tttcctagaaatcagttttaggccggagtgaaaatagtaagggaagagatctggtctcca 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttcctagaaatcagttttaggccggagtgaaaatagtaagggaagagatctggtctcca 383
Query: 255 ctgaaaggcacacgtgagaggcacacgtggaaacaagacgagatcaccactgtgctggga 314
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 382 ctgaaaggcacacgtgagaggcacacgtggaatcaagacgagatcaccactgtgctggga 323
Query: 315 atgttatggagggtgcctagcatggcatgagatgcatttcctgtctggcatttattgtga 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atgttatggagggtgcctagcatggcatgagatgcatttcctgtctggcatttattgtga 263
Query: 375 gagacagcagtgggttgtcttggtcatatttctctccagattaatcc 421
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagacagcagtgggttgtcttggtcatatttctctccagattaatcc 216
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space: 337410
Effective search space used: 337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_k06.g1 MSMg01no064_k06.g1 CHROMAT_FILE:
MSMg01no064_k06.g1 PHD_FILE: MSMg01no064_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:43 2005
(383 letters)
>mm_chr1_52350245_52351027
Length = 783
Score = 600 bits (310), Expect = e-176
Identities = 340/350 (97%), Gaps = 2/350 (0%)
Strand = Plus / Plus
Query: 1 ttttctaagcacgccagtaccttaaagtgtgaccttgacttaagacaggccatccacccg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ttttctaagcacgccagtaccttaaagtgtgaccttgacttaagacaggccatccacctg 260
Query: 61 ccgaaagaaatgaccccagggatatgggcctgctgcctccattaaaggccggcttttcaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ttgaaagaaatgaccccagggatatgggcctgctgcctccattaaaggccggctcttcaa 320
Query: 121 aaacatgcagagctaatcaatcccttctggtttcttcatgccgaaagggactgttaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacatgcagagctaatcaatcccttctggtttcttcatgccgaaagggactgttaggag 380
Query: 181 aattataaagacaatatctacaaaggactttgagctcattcaataaaaaaatgtgtttat 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattataaagataatatctacaaaggactttgagctcattcaataaaaaaatgtgtttat 440
Query: 241 atggcctgaggcgctccggtagacagactttatgtattaatcgttgtgtctagaggtgc- 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 atggcctgaggcgctctggtagacagactttatgtattaatcgttgtgtctagaggtaca 500
Query: 300 cgacaggtgtggattcagaggcccagagctaaattatttaactcagtcct 349
| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 c-acaggtgtggattcagaggcccagagctaaaatatttaactcagtcct 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
