BAC Information

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BAC

Clone NameMSMg01-064L23
Chromosome1 (Build37)
Map Location 94,791,848 - 94,792,111
singlet/doubletsinglet
Overlap geneAnkmy1
Upstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1
Downstream geneDusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L23.T7 (MSMg01no064_l23.b1)MSMg01-064L23.TJ (MSMg01no064_l23.g1)
ACCAG290132AG290133
length1,207771
length of high quality
(start - end)
264 (133 - 396)---
definitionCHROMAT_FILE: MSMg01no064_l23.b1 PHD_FILE: MSMg01no064_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:55 2005CHROMAT_FILE: MSMg01no064_l23.g1 PHD_FILE: MSMg01no064_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTACACTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATT
CCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACAAACAA
AAAAAATGTACCATGAATACTTATTTCCACCATATGAAATAGCTCTTTCT
TATACATATTATTTAAAATTTGCCTTTTTCCCCACCCCTTAATTTATATA
TACATATACTTCACAATTATATGCAATCATATATTAGAAAGTTTTGAAAG
TTTCAATGAGTGTAGGTTTGTGTGCTCTGGGTACTGAATGACTCCCTCCC
CCATATCTGGGCCCCATGCCTTTGTAGTAAGTGTTCCCTCCAGTTAGCCA
TGGCTGCCCTGCTGCCTGTAATTGGGCCTTTGCTTGAGAGGGCCACAAGG
TGGCGCCCTGCAGAGCCATTCTGTGTCTTCCTCTTGGCCTGCAATGTTTA
TTTTTCTCCCCCCCCCCATGTGCCTGTTGTTTCTTTGAAAATAGAAGTCT
CTGTGATGTGGAATCACCACAGCTTAACTGAAAGAGCTTTAGACTGTTTC
CTGTTTGGGTCGACTGTGAATAAAGCCGCTATGCACACACGTTTAGTTGG
ATTTTGTGTGTTCATGTAAACAGTAAATGCGTGGTTTTCGTTTCTCTGGG
AAAACTTGTAAGTGTAGTCTGAGGTCCATGTGTTGTGGTGCTTCCCTTCT
CTGATGTTTGTCCTGAACAATGGATGCTAGGTGTCAGTCTGCATCCTTTG
TGATCCCTGCTACATTCCCAGTCTTCCCCCCTTTTACTTATTTTGAAGAA
TCTTTCTGACTTTAACCGCATAATTCTATTTTTTAATATCTTTGGTTTAA
CTCCTGCTTGGTTTTTAATTTTTTAATCTTTCTTGCTCTTCTTTTTCTTA
ATTCTTGGTTATTTTTGCTTTTTTTTCTTAATTGTCTTACCAAACTTTTA
AATTTCTCCTTTCTCTTTTTTATCTATACTCCCCTGTTTGTTTCTATCGT
ATACTCTCTCTTATATCTAACTTTTTTTTCTTCTACTCTTTATCTATATC
TCACCTTTAGATTTCATTATTTAACTTCATTTTTTTCTCCCTTCTATATC
CTTTTATCATTATACACACTTTCTTTTTTATTATATTCATCTCTCTTTAT
CATTATCTTAATCTCATTAATAACTCTCTTATCTTTAACTTCTTTTATTT
CATTTAA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAAGATGAACATTCTTGGATGCATGTGAC
CAAAGTTTTGAAAAACGTCTGGAAAATTAGGCAGGGGGTAGTTGGATTGA
ATATGCTGCAGGGGTCCCCTGACTGGGGGATGTGGGAAATTGTAAAGGGG
AAGCTAATCTATAGGGAAAACTGCAAAATGTTGAAAATGTCGGGAACAAG
GAATTCACCAAGGAAACTGGCTTAAAAAAGGCCAGGGGTTTTGCGAACAG
CAGGCCTGTAGGATTAGGAATGTGTTTCCCGTTAGCTTTACCTGAATTTG
ATGCAGCCTATTTTTTTTTGCCCCCCCCCCCCCAATTTGAGGGTTTGCCC
AAAGAAAATTGGTTCCACCCCCCCGCCTGTAAAAAATTCTTCTGAAGGCT
AATGGTTTTAGAAAAATCCATTCCACTATGAGCAGCTCCTTTCCCTAGAA
AGGAGTTTCTGAGCTATTTAGGAAAGTTGGTTGCCTATAACCTCCCTTGG
AAGCTTTTAAAAATCATTCCTCTCTTTTAACTGCGGACTTTCCCTGTTTC
GTACTTTATCCCCTCTGCCCCTATACATTGCTTTCTGTCTCACCCTCTCA
ATCCTTCCCTGTATACTTTCGCCCTTAATTTTATTGCTCTCGACTTTCTC
ACCCCTTTCTCTCGTTAGGCCTTTTTTTCCCACACAATATCCATCCCTTC
CCCTCCCCTCTTTTTTACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l23.b1 MSMg01no064_l23.b1 CHROMAT_FILE:
MSMg01no064_l23.b1 PHD_FILE: MSMg01no064_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:55 2005
         (264 letters)



>mm_chr1_94791648_94792311
          Length = 664

 Score =  511 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgaaatagctctttcttatacatattatttaaaatttgcctttttccccaccccttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tatgaaatagctctttcttatacatattatttaaaatttgcctttttccccaccccttaa 405

                                                                       
Query: 61  tttatatatacatatacttcacaattatatgcaatcatatattagaaagttttgaaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tttatatatacatatacttcacaattatatgcaatcatatattagaaagttttgaaagtt 345

                                                                       
Query: 121 tcaatgagtgtaggtttgtgtgctctgggtactgaatgactccctcccccatatctgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcaatgagtgtaggtttgtgtgctctgggtactgaatgactccctcccccatatctgggc 285

                                                                       
Query: 181 cccatgcctttgtagtaagtgttccctccagttagccatggctgccctgctgcctgtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cccatgcctttgtagtaagtgttccctccagttagccatggctgccctgctgcctgtaat 225

                                   
Query: 241 tgggcctttgcttgagagggccac 264
           ||||||||||||||||||||||||
Sbjct: 224 tgggcctttgcttgagagggccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)