BAC Information

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BAC

Clone NameMSMg01-064P24
Chromosome1 (Build37)
Map Location 78,268,983 - 78,269,298
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha4, LOC100039330, Pax3, LOC100039210
Downstream geneSgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P24.T7 (MSMg01no064_p24.b1)MSMg01-064P24.TJ (MSMg01no064_p24.g1)
ACCAG290314AG290315
length747757
length of high quality
(start - end)
319 (46 - 364)---
definitionCHROMAT_FILE: MSMg01no064_p24.b1 PHD_FILE: MSMg01no064_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:22 2005CHROMAT_FILE: MSMg01no064_p24.g1 PHD_FILE: MSMg01no064_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTATCTTTTTAAATGGAAAAATAAAATATTCCTGGAGTCAATT
AGAGCTGGACCCAGTCCTGGCTCTGGTAATTGAATATGGGAAATTATTTG
GGGATGAAGTTTATGTTGCTGAAGAGACAAAATACATGATACAGGCTTAT
TTCTTCAAAATGGAATTCCCTCAAAGGTAATTCAAGGACGTGCAACATTT
TTCAGTCTTGATATGGCAGGTCCTTCTGAGGACAGGAAATGATAACAAAT
GATCTTTGAATAATATATTTTTTTCTAATGAATGCACAGAAAAGAATCAT
TTTAGCATTATAGGTTTATATGATTCCACCCACCTCGCTAGTTGAAAGCT
CAAAAGTCAATCATTAAAAAAACATTAAAGATACAGGTGTGTGTGTGTGT
GTGTGTGTAAATGCGGGTACCCACAGAGGCCAGATCCCTGGCATCTAGAG
TCAAAGGTATTTGAGGGCTTTCTCATGTCAGTTCTGGGCACCAAACTCTG
GCCTCCTGCAAGAGCCACTTAGCCACTAAGCTGCCTCCCCAGCCTTAAAA
GCCAATCATTTTCCAACTTGATAAAAGTAAGCCTGGAAATTCTGTCAAGT
CACTGGGCGGCTGACATCCTAAAGCTACCAGATTAATGACTGGGCTATGA
CAACGGATGACTCGAGGGCGAAAATGTCAGCACTCATGGGAATCCCT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATGATTTTGTTAAATCTCTTTGTT
GTAAGGGGGGGTCCGGTCTAGGCCAAAGTTTTATTGGAAAAAGAAAATAG
GGGGATGTGTAAAGAAAGATCTTGTGAAGGGGCAAGTCACTCTTCAAAGA
TTTTCAGCCGGCCACCAGAAACAGCAGCCCTGGATGGAAAAGCTCCCCGC
CAGGTTTAGGATGGGGATTCTAGCCTCAGTTGGGCACGTTACCGGCTGGG
AATTCTCTTCTCCTGGGTAACCTAGGGGATGGACAGGGTTGTTTGCAAGC
TCATTTTCAGCTAGGATCTTGGTTTGCCCCCCCCCCCAGGCCTTTGTTGA
AGGTTCTCATGCACGGTCCCCCCCCTACCCAAAAAAAATTTAACATGTGT
CACAGCTCAAATCATTCAAAACTGGCTCGAGGAATCTAGAATTTATTCAT
TAAAGACCCTTTGTTATAGGGGGCCTTTTAAAAATGGCCTGGGGCAGGAG
AGAGAGCTCAGAAGTTAAAAGCATTAGTGGTTTTTTTTAGAGAACCTGCG
TTCTATTCCCAGCACCCATAACGAGGTTCATAACCCTTTGCCGTTCTTCC
CGACTCTGACCTTGGAATCCGCGGTCTTCCCACTTATGCCGCCCAAATTC
CCCTAATACTTTTCAACACCAACCCTCCCTTACCATCTCTTTCGCACTTT
TGCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p24.b1 MSMg01no064_p24.b1 CHROMAT_FILE:
MSMg01no064_p24.b1 PHD_FILE: MSMg01no064_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:22 2005
         (319 letters)



>mm_chr1_78268779_78269498
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattatctttttaaatggaaaaataaaatattcctggagtcaattagagctgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattatctttttaaatggaaaaataaaatattcctggagtcaattagagctgga 264

                                                                       
Query: 65  cccagtcctggctctggtaattgaatatgggaaattatttggggatgaagtttatgttgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccagtcctggctctggtaattgaatatgggaaattatttggggatgaagtttatgttgc 324

                                                                       
Query: 125 tgaagagacaaaatacatgatacaggcttatttcttcaaaatggaattccctcaaaggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaagagacaaaatacatgatacaggcttatttcttcaaaatggaattccctcaaaggta 384

                                                                       
Query: 185 attcaaggacgtgcaacatttttcagtcttgatatggcaggtccttctgaggacaggaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attcaaggacgtgcaacatttttcagtcttgatatggcaggtccttctgaggacaggaaa 444

                                                                       
Query: 245 tgataacaaatgatctttgaataatatattttttt-ctaatgaatgcacagaaaagaatc 303
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tgataacaagtgatctttgaataatatattttttttctaatgaatgcacagaaaagaatc 504

                           
Query: 304 attttagcattatagg 319
           ||||||||||||||||
Sbjct: 505 attttagcattatagg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space:   220410
Effective search space used:   220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)