BAC Information

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BAC

Clone NameMSMg01-065A18
Chromosome1 (Build37)
Map Location 43,921,081 - 44,041,198
singlet/doubletdoublet
Overlap geneLOC666676, LOC100042303, EG666690, Tpp2
Upstream geneMrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1
Downstream geneA530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065A18.T7 (MSMg01no065_a18.b1)MSMg01-065A18.TJ (MSMg01no065_a18.g1)
ACCAG290349AG290350
length686678
length of high quality
(start - end)
314 (70 - 383)156 (100 - 255)
definitionCHROMAT_FILE: MSMg01no065_a18.b1 PHD_FILE: MSMg01no065_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:26 2005CHROMAT_FILE: MSMg01no065_a18.g1 PHD_FILE: MSMg01no065_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(44,040,885 - 44,041,198)(43,921,081 - 43,921,236)
sequence
AATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAACCGC
GGAATTCACTCTGATTCCAGCATTTATAGATCCCAGGATTAGGTTAAGTA
GACTTACATAGTTTTGTATGAACTAATGCTAAATGACAAATGCACAGATG
TAAGAATTGCATTACACCAAAATGACCTATGATAAAGGGTGACAGATCCA
CATAAAAAACATTCTCTGCAACAAATCTGTAATAAAAACAAGATGGAAAA
ACCTGAAATAAATACCTTTAAGCTTTAAATAAGTTATCTCTAAACTAGAA
ACAAAAAGCATCATTTTGAAACTATAAAAAGCAGAATCACAAGAAACACC
ATACATCTATCCACATAATTGCTGAGGTCTTGTATACCACAGCAAGCCTT
CACAAATGTGAGAGCCAATATCCATTAATAAATATCCTTCATATTGGCTT
TTATAAATTAATGAAGAGAACTTGACTTATTCCTGTATCTATAACATGCT
GGTCGAAATTGCTAGGGTATGCTATTATTTTACTTATCCCATTTGCTTCA
ACCCATTGTGATTTGCATGCTTTGAACTTTATTGACTGACGCGCAATATT
GTTATTTTTTTGCCGCCTTGTTTAAAAGAACATAACATACTTTTTAATGT
ATTATTTTTATAAGATATATTATATTCTTCCCCCTC
GGACAATACTAAGATAGGCCTGGCGGCCGCCTGGTTTCAGAATAGAGGTG
ACCTATAGAAGTTTCTGAGAAATTCTTTACTTCTCCCTAGCCACGGGATG
CTGCTGATAACCACTGTCTCCGAGACTCCTTCAAAGGTTCTTTGCTTCCT
TCAATGCTTCCTGCCATTTTTCTTTTATCCTAGAGAAATGTCTCCAGCAG
TCCCATTCCTTCTCGCAAAGTTGAGGTTGATCTACTGAGCATGGTTATTT
ATTCTTACTAATGCAGCTACGAAATGATTGTAGTAGACCAGGTCTCTCAG
GGCACCTTTCTTGGGGATTGTAGTTTTTGTGGTTTTGCAATGAATGACGG
ACTCCCAAGCTGATGCCATCAGTACAGCTTGTTCACCAGAAGAGCCATCC
TTTGAGAAAAGCCTAGATAATGTGTTTCACATTTTTAAGGGAATTTTTTA
AATACGGACAGTTTAAATAAGTGTGGAGGAGTGGACAGGCACTTACCAGA
GTCCTGTCCCAGCCTTAAGGAAACAGGTCTGGGTTAGATGATAGACTTGG
ATGAAGGCTAAACAGTTGATTGGTCTCTGGCCTTATAAGGGTATGAGGTG
TGCTCTAGGAAACTCTGGTCTCTTACTCGCGAGCGTGCGTAACAATGGGG
TTTAAATAAGGGTTGGATCCTGCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_a18.b1 MSMg01no065_a18.b1 CHROMAT_FILE:
MSMg01no065_a18.b1 PHD_FILE: MSMg01no065_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:26 2005
         (314 letters)



>mm_chr1_44040685_44041398
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatttatagatcccaggattaggttaagtagacttacatagttttgtatgaactaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gcatttatagatcccaggattaggttaagtagacttacatagttttgtatgaactaatgc 455

                                                                       
Query: 61  taaatgacaaatgcacagatgtaagaattgcattacaccaaaatgacctatgataaaggg 120
           ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 454 taaatgagaaatgcacagatgtaagaattgtattacaccaaaatgacctatgataaaggg 395

                                                                       
Query: 121 tgacagatccacataaaaaacattctctgcaacaaatctgtaataaaaacaagatggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgacagatccacataaaaaacattctctgcaacaaatctgtaataaaaacaagatggaaa 335

                                                                       
Query: 181 aacctgaaataaatacctttaagctttaaataagttatctctaaactagaaacaaaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aacctgaaataaatacctttaagctttaaataagttatctctaaactagaaacaaaaagc 275

                                                                       
Query: 241 atcattttgaaactataaaaagcagaatcacaagaaacaccatacatctatccacataat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 274 atcattttgaaactataaaaagcagaatcacaagaaacaccatacatctatccacgtaat 215

                         
Query: 301 tgctgaggtcttgt 314
           ||||||||||||||
Sbjct: 214 tgctgaggtcttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no065_a18.g1 MSMg01no065_a18.g1 CHROMAT_FILE:
MSMg01no065_a18.g1 PHD_FILE: MSMg01no065_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:26 2005
         (156 letters)



>mm_chr1_43920881_43921436
          Length = 556

 Score =  248 bits (128), Expect = 2e-70
 Identities = 149/156 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgctgataaccactgtctccgagactccttcaaaggttctttgcttccttcaatgctt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgctgataaccactgtctccaagactccttcaaaggttctttgcttccttcaatgctt 260

                                                                       
Query: 61  cctgccatttttcttttatcctagagaaatgtctccagcagtcccattccttctcgcaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  
Sbjct: 261 cctgccatttttcttttatcctagagaaatgtctccagcagtcccattccttcttgcagg 320

                                               
Query: 121 gttgaggttgatctactgagcatggttatttattct 156
           |||| | ||||||||||| |||||||||||||||||
Sbjct: 321 gttgtgtttgatctactgtgcatggttatttattct 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)