BAC Information

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BAC

Clone NameMSMg01-065B15
Chromosome1 (Build37)
Map Location 89,050,457 - 89,203,012
singlet/doubletdoublet
Overlap geneEcel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1
Upstream geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3
Downstream geneTnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065B15.T7 (MSMg01no065_b15.b1)MSMg01-065B15.TJ (MSMg01no065_b15.g1)
ACCAG290391AG290392
length747751
length of high quality
(start - end)		370 (104 - 473)511 (136 - 646)
definitionCHROMAT_FILE: MSMg01no065_b15.b1 PHD_FILE: MSMg01no065_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:31 2005CHROMAT_FILE: MSMg01no065_b15.g1 PHD_FILE: MSMg01no065_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,050,457 - 89,050,822)(89,202,502 - 89,203,012)
sequence
TTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTGTTTTTNGGGNTTTT
ACCCCNCNCCTCTATAATTGCGGCGCTAATACGACTCCTATATCCAGAAA
TCCGCGGAATTCTTAGCCATTCCCAGCCTTTCAGGGCGGTCGCCTGCGGG
CTCCCACTCCCCGAACCCCACCTGCCTGAGGGCTGGGAATTGCGGCTCCC
GCAGCTCAGCTAAACACAGCAATTACTCCAGGGAAATTACTTGCGCCCTC
CTCCCGCGCTCTGCCCCTGCGCGCGCCCCGCTCCTCCCTGATCCCCTAGC
TGTCCGAACCCGTATCCTTCGGACGCGGGATGGAGCAGGGGGCACGCCGG
GCCAAAGATGCGGGAGGTCTCAGGTGGTGTGCGAGGATTGTCGTGGGGCG
GAAAGGCGGAGGCGGGGGGACACTCACGCGGATGACGTAGCGCGAGGAGT
TCCTGTCGTCCAGGCTGACTGCAACCCAGAAGAGCGCGGCCGCGCTGTAC
ACACCCTGAGCCTTGTACAACAGTCGGTTGAGGTCCCAGCGAGCCGCCCC
GGGGCGATCGGCCGCGCCGCCCAGGTCCCAGCCGCCGCAGTCCTCGATGA
CCTCGATCATGGGCCGCGGCCCGAGCCTCTCGATCTCGCGCATGTCAAGG
TACGAGCGTAATAAGGCGCGCACCTTGCGCAGAGAATTGCCGTCGGGGCC
TCCGGCGTGTCTTCTCCGCCAGGGCTGCATACGCTTCCTCGTTCTGG

NNNNNNNNNNNNNNNNNNNNNNCCTTTTTNTNNNNNNTNTNNTNNNTATT
CTTTCTTTTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCTGAGAATCAG
AAAAATGGGCATAAATTTCTTTTTAACTAAAATTTGTTTGGAGACAAAGG
CAGGAAGATTACAGACTTGAGGCCAACCTGGGCTACATATGAGACTCTAT
TTCAAAAACTACTAAAATGAAATTAAACATAAAAAGTCTCTAAATTCCTC
AACACTTAACTGTATTAAAATATATGAGGGGGATGCACATAGGTTTGTGC
AAACATAAGCCACTCCATCTGTGTGCATAGATGAGCATGCACATGTGTAC
ACACACATGCAGAGGCCAGAAGGCCCTTGTCTGTAGTTCCTCGGGTGCTC
ACCTCATTTTAGCCTGGAGCAGCTTGCTAACCAAGCAGGCTGGCTGGCTG
GCTAGGAAACCCCAAGGATCAGGATATACCATCATGTCTGGCTTCTTTTT
CGGGAAGGTTCAGGGGCTTGAACTTGGGTCCTCATGCGTGTAAGGGAAGT
GCTTTGCCAAGTACACACTCTCTCTCCAACCCTACACACCCCTTTATATT
GGCGGTAGGGTGCCTGAGCATATAAAAGTGTTTACATCTCAGGTTTCTAC
ATCCAACCCCTTCATGTACACAAAGGGCCCGACTATACCTTTCTCTCCCC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_b15.b1 MSMg01no065_b15.b1 CHROMAT_FILE:
MSMg01no065_b15.b1 PHD_FILE: MSMg01no065_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:31 2005
         (370 letters)



>mm_chr1_89050255_89051024
          Length = 770

 Score =  661 bits (342), Expect = 0.0
 Identities = 360/366 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcttagccattcccagcctttcagggcggtcgcctgcgggctcccactccccgaa 62
           ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 203 ggaattcttagccaaccccagcctttcagggcgatcgcctgcgggctcccactccccgaa 262

                                                                       
Query: 63  ccccacctgcctgagggctgggaattgcggctcccgcagctcagctaaacacagcaatta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccccacctgcctgagggctgggaattgcggctcccgcagctcagctaaacacagcaatta 322

                                                                       
Query: 123 ctccagggaaattacttgcgccctcctcccgcgctctgcccctgcgcgcgccccgctcct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctccagggaaattacttgcgccctcctcccgcgctctgcccctgcgcgcgccccgctcct 382

                                                                       
Query: 183 ccctgatcccctagctgtccgaacccgtatccttcggacgcgggatggagcagggggcac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccctgatcccctagctgtccgaacccgtatccttcggacgcgggatggagcagggggcac 442

                                                                       
Query: 243 gccgggccaaagatgcgggaggtctcaggtggtgtgcgaggattgtcgtggggcggaaag 302
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 gccgggccaaggatgcgggaggtctcaggtggggtgcgaggattgtcgtggggcggaaag 502

                                                                       
Query: 303 gcggaggcggggggacactcacgcggatgacgtagcgcgaggagttcctgtcgtccaggc 362
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcggagggggggggacactcacgcggatgacgtagcgcgaggagttcctgtcgtccaggc 562

                 
Query: 363 tgactg 368
           ||||||
Sbjct: 563 tgactg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no065_b15.g1 MSMg01no065_b15.g1 CHROMAT_FILE:
MSMg01no065_b15.g1 PHD_FILE: MSMg01no065_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:31 2005
         (511 letters)



>mm_chr1_89202418_89203328
          Length = 911

 Score =  965 bits (499), Expect = 0.0
 Identities = 508/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacctgagaatcagaaaaatgggcataaatttctttttaactaaaatttgtttggagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aaacctgagaatcagaaaaatgggcataaatttctttttaactaaaatttgtttggagac 536

                                                                       
Query: 61  aaaggcaggaagattacagacttgaggccaacctgggctacatatgagactctatttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaaggcaggaagattacagacttgaggccaacctgggctacatatgagactctatttcaa 476

                                                                       
Query: 121 aaactactaaaatgaaattaaacataaaaagtctctaaattcctcaacacttaactgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaactactaaaatgaaattaaacataaaaagtctctaaattcctcaacacttaactgtat 416

                                                                       
Query: 181 taaaatatatgagggggatgcacataggtttgtgcaaacataagccactccatctgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 taaaatatatgagggggatgcacataggtttgtgcaaacataagccactccatctgtgtg 356

                                                                       
Query: 241 catagatgagcatgcacatgtgtacacacacatgcagaggccagaaggcccttgtctgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 catagatgagcatgcacatgtgtacacacacatgcagaggccagaaggcccttgtctgta 296

                                                                       
Query: 301 gttcctcgggtgctcacctcattttagcctggagcagcttgctaaccaagcaggctggct 360
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 295 gttcctcgggtgctcacctcattttagcctggagcagcttgctaagtaagcaggctggct 236

                                                                       
Query: 361 ggctggctaggaaaccccaaggatcaggatataccatcatgtctggcttctttttcggga 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ggctggctagggaaccccaaggatcaggatataccatcatgtctggcttctttttcggga 176

                                                                       
Query: 421 aggttcaggggcttgaacttgggtcctcatgcgtgtaagggaagtgctttgccaagtaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aggttcaggggcttgaacttgggtcctcatgcgtgtaagggaagtgctttgccaagtaca 116

                                          
Query: 481 cactctctctccaaccctacacaccccttta 511
           |||||||||||||||||||||||||||||||
Sbjct: 115 cactctctctccaaccctacacaccccttta 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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