Query= MSMg01no065_b17.b1 MSMg01no065_b17.b1 CHROMAT_FILE:
MSMg01no065_b17.b1 PHD_FILE: MSMg01no065_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:31 2005
(502 letters)
>mm_chr1_177722596_177723497
Length = 902
Score = 963 bits (498), Expect = 0.0
Identities = 501/502 (99%)
Strand = Plus / Minus
Query: 1 tgcagtgtataactatcctctttatcatcccatcccttttgagtcccagtcaacaccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgcagtgtataactatcctctttatcatcccatcccttttgagtcccagtcaacaccaaa 643
Query: 61 cttcatcacctccagcgtccacaaacggaggtgtccatcctcgtgcgcagagaccaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cttcatcacctccagcgtccacaaacggaggtgtccatcctcgtgcgcagagaccaggag 583
Query: 121 aggaggctgtggttccacgaagctgatgggtacaggctgtttcctgcttgctgactgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aggaggctgtggttccacgaagctgatgggtacaggctgtttcctgcttgctgactgctg 523
Query: 181 ctctcccaccatgtctgtatgctcacctagtaagaaaaactcatgagctctgctggtatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctctcccaccatgtctgtatgctcacctagtaagaaaaactcatgagctctgctggtatt 463
Query: 241 tacaacccttggagtttcaagctttatgaaacagcaaagaagagatgggcgggaaagagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tacaacccttggagtttcaagctttatgaaacagcaaagaagagatgggcgggaaagagt 403
Query: 301 aatgtaaagttttctcaaaaaaaaaaaagtttaaacttgagaagactcacagggaagaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aatgtaaagttttctcaaaaaaaaaaaagtttaaacttgagaagactcacagggaagaaa 343
Query: 361 acagaaaaagtacttatacaatagaatcctggatcactgggaaagtctaaaacacttggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acagaaaaagtacttatacaatagaatcctggatcactgggaaagtctaaaacacttggc 283
Query: 421 cggggtcctatttgtaaaaacctgtagaagattctgcatgtggtgcctaaaccttgtgaa 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 282 cggggtcctatttgtaaaaacctctagaagattctgcatgtggtgcctaaaccttgtgaa 223
Query: 481 agtttcaacacatctagaatgt 502
||||||||||||||||||||||
Sbjct: 222 agtttcaacacatctagaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_b17.g1 MSMg01no065_b17.g1 CHROMAT_FILE:
MSMg01no065_b17.g1 PHD_FILE: MSMg01no065_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:31 2005
(520 letters)
>mm_chr1_177553702_177554622
Length = 921
Score = 920 bits (476), Expect = 0.0
Identities = 503/512 (98%), Gaps = 1/512 (0%)
Strand = Plus / Plus
Query: 1 taagcataaatggaccatcatatttacatggccccaagcagagaagtcatcaacaatgcg 60
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 taagcataaatgaaccatcatatttacatggccccaagcagagaagtcgtcaacaatgcg 260
Query: 61 tcatacctccacatgacgcacttcaggtgaactcttaagtgtccttttaaataacagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatacctccacatgacgcacttcaggtgaactcttaagtgtccttttaaataacagggc 320
Query: 121 ttccagggtcatgtgaatttctcaatactagagaacaacttttaacaaaatcagcaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccagggtcatgtgaatttctcaatactagagaacaacttttaacaaaatcagcaggct 380
Query: 181 tgctggaaattacaagggggctaaagggcaagaaatgtccttggaaccatgggaaaagaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgctggaaattacaagggggctaaagggcaagaaatgtccttggaaccatggaaaaagaa 440
Query: 241 aagtatcctgatcctattttctgacactataaccctaagcaagaaactgctattttcata 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtatactgatcctattttctgacactataaccctaagcaagaaactgctattttcata 500
Query: 301 tttgccatgatagattcgttccactttcctgttcccctaaacaagctttaaaacaaaaag 360
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgccatgatagattcattccattttcctgttcccctaaacaagctttaaaacaaaaag 560
Query: 361 aaacccagtctttt-aaaagagattttagaatccattaaaatcaccagagcaaagttcca 419
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 aaacccagtctttttaaaagagattttagaatgcattaaaatcaccagagcaaagttcca 620
Query: 420 ggaactttaagcaacctggacttcatagcttctttccaagatttatgttagtgtgtgtct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaactttaagcaacctggacttcatagcttctttccaagatttatgttagtgtgtgtct 680
Query: 480 gtgtgtgcatgggtgcatgtgtgtgtgtgtgt 511
|||||||||||||||||| |||||||||||||
Sbjct: 681 gtgtgtgcatgggtgcatatgtgtgtgtgtgt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
