BAC Information

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BAC

Clone NameMSMg01-065B17
Chromosome1 (Build37)
Map Location 177,553,902 - 177,723,297
singlet/doubletdoublet
Overlap geneFh1, Kmo, Opn3, Chml, Wdr64
Upstream geneFmn2, Grem2, Rgs7
Downstream geneExo1, Gm104, Pld5, B020018G12Rik, Cep170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065B17.T7 (MSMg01no065_b17.b1)MSMg01-065B17.TJ (MSMg01no065_b17.g1)
ACCAG290395AG290396
length657663
length of high quality
(start - end)
502 (42 - 543)520 (56 - 575)
definitionCHROMAT_FILE: MSMg01no065_b17.b1 PHD_FILE: MSMg01no065_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:31 2005CHROMAT_FILE: MSMg01no065_b17.g1 PHD_FILE: MSMg01no065_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,722,796 - 177,723,297)(177,553,902 - 177,554,413)
sequence
CCTATATCCAGAGATCCGCGGAATTCCATGTGGAAGACGGCTGCAGTGTA
TAACTATCCTCTTTATCATCCCATCCCTTTTGAGTCCCAGTCAACACCAA
ACTTCATCACCTCCAGCGTCCACAAACGGAGGTGTCCATCCTCGTGCGCA
GAGACCAGGAGAGGAGGCTGTGGTTCCACGAAGCTGATGGGTACAGGCTG
TTTCCTGCTTGCTGACTGCTGCTCTCCCACCATGTCTGTATGCTCACCTA
GTAAGAAAAACTCATGAGCTCTGCTGGTATTTACAACCCTTGGAGTTTCA
AGCTTTATGAAACAGCAAAGAAGAGATGGGCGGGAAAGAGTAATGTAAAG
TTTTCTCAAAAAAAAAAAAGTTTAAACTTGAGAAGACTCACAGGGAAGAA
AACAGAAAAAGTACTTATACAATAGAATCCTGGATCACTGGGAAAGTCTA
AAACACTTGGCCGGGGTCCTATTTGTAAAAACCTGTAGAAGATTCTGCAT
GTGGTGCCTAAACCTTGTGAAAGTTTCAACACATCTAGAATGTTTTATAT
ATCTGACATAGGTTTTAGCAAAATGCACTGGAGACTAAAAAGTTCAGGAA
TAGTTTGGATTTTAAAAACCTAGAATTAGCATAAAAGACATCCATTTGTT
TTTGTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTAAGCATAAATGGACCATCATATTTACATGGCCCCAAGCAGAGAA
GTCATCAACAATGCGTCATACCTCCACATGACGCACTTCAGGTGAACTCT
TAAGTGTCCTTTTAAATAACAGGGCTTCCAGGGTCATGTGAATTTCTCAA
TACTAGAGAACAACTTTTAACAAAATCAGCAGGCTTGCTGGAAATTACAA
GGGGGCTAAAGGGCAAGAAATGTCCTTGGAACCATGGGAAAAGAAAAGTA
TCCTGATCCTATTTTCTGACACTATAACCCTAAGCAAGAAACTGCTATTT
TCATATTTGCCATGATAGATTCGTTCCACTTTCCTGTTCCCCTAAACAAG
CTTTAAAACAAAAAGAAACCCAGTCTTTTAAAAGAGATTTTAGAATCCAT
TAAAATCACCAGAGCAAAGTTCCAGGAACTTTAAGCAACCTGGACTTCAT
AGCTTCTTTCCAAGATTTATGTTAGTGTGTGTCTGTGTGTGCATGGGTGC
ATGTGTGTGTGTGTGTGTGTGTGTGTATGTTTGCACACACGCATATGTCG
AGGTTATTAAGTGTGTTACAGGTCCCCTAAAGCTGATGTTACAGGTGGGC
GTGAAACACCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_b17.b1 MSMg01no065_b17.b1 CHROMAT_FILE:
MSMg01no065_b17.b1 PHD_FILE: MSMg01no065_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:31 2005
         (502 letters)



>mm_chr1_177722596_177723497
          Length = 902

 Score =  963 bits (498), Expect = 0.0
 Identities = 501/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagtgtataactatcctctttatcatcccatcccttttgagtcccagtcaacaccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgcagtgtataactatcctctttatcatcccatcccttttgagtcccagtcaacaccaaa 643

                                                                       
Query: 61  cttcatcacctccagcgtccacaaacggaggtgtccatcctcgtgcgcagagaccaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cttcatcacctccagcgtccacaaacggaggtgtccatcctcgtgcgcagagaccaggag 583

                                                                       
Query: 121 aggaggctgtggttccacgaagctgatgggtacaggctgtttcctgcttgctgactgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aggaggctgtggttccacgaagctgatgggtacaggctgtttcctgcttgctgactgctg 523

                                                                       
Query: 181 ctctcccaccatgtctgtatgctcacctagtaagaaaaactcatgagctctgctggtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctctcccaccatgtctgtatgctcacctagtaagaaaaactcatgagctctgctggtatt 463

                                                                       
Query: 241 tacaacccttggagtttcaagctttatgaaacagcaaagaagagatgggcgggaaagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tacaacccttggagtttcaagctttatgaaacagcaaagaagagatgggcgggaaagagt 403

                                                                       
Query: 301 aatgtaaagttttctcaaaaaaaaaaaagtttaaacttgagaagactcacagggaagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aatgtaaagttttctcaaaaaaaaaaaagtttaaacttgagaagactcacagggaagaaa 343

                                                                       
Query: 361 acagaaaaagtacttatacaatagaatcctggatcactgggaaagtctaaaacacttggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acagaaaaagtacttatacaatagaatcctggatcactgggaaagtctaaaacacttggc 283

                                                                       
Query: 421 cggggtcctatttgtaaaaacctgtagaagattctgcatgtggtgcctaaaccttgtgaa 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 282 cggggtcctatttgtaaaaacctctagaagattctgcatgtggtgcctaaaccttgtgaa 223

                                 
Query: 481 agtttcaacacatctagaatgt 502
           ||||||||||||||||||||||
Sbjct: 222 agtttcaacacatctagaatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no065_b17.g1 MSMg01no065_b17.g1 CHROMAT_FILE:
MSMg01no065_b17.g1 PHD_FILE: MSMg01no065_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:31 2005
         (520 letters)



>mm_chr1_177553702_177554622
          Length = 921

 Score =  920 bits (476), Expect = 0.0
 Identities = 503/512 (98%), Gaps = 1/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagcataaatggaccatcatatttacatggccccaagcagagaagtcatcaacaatgcg 60
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 taagcataaatgaaccatcatatttacatggccccaagcagagaagtcgtcaacaatgcg 260

                                                                       
Query: 61  tcatacctccacatgacgcacttcaggtgaactcttaagtgtccttttaaataacagggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatacctccacatgacgcacttcaggtgaactcttaagtgtccttttaaataacagggc 320

                                                                       
Query: 121 ttccagggtcatgtgaatttctcaatactagagaacaacttttaacaaaatcagcaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccagggtcatgtgaatttctcaatactagagaacaacttttaacaaaatcagcaggct 380

                                                                       
Query: 181 tgctggaaattacaagggggctaaagggcaagaaatgtccttggaaccatgggaaaagaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgctggaaattacaagggggctaaagggcaagaaatgtccttggaaccatggaaaaagaa 440

                                                                       
Query: 241 aagtatcctgatcctattttctgacactataaccctaagcaagaaactgctattttcata 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtatactgatcctattttctgacactataaccctaagcaagaaactgctattttcata 500

                                                                       
Query: 301 tttgccatgatagattcgttccactttcctgttcccctaaacaagctttaaaacaaaaag 360
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgccatgatagattcattccattttcctgttcccctaaacaagctttaaaacaaaaag 560

                                                                       
Query: 361 aaacccagtctttt-aaaagagattttagaatccattaaaatcaccagagcaaagttcca 419
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 aaacccagtctttttaaaagagattttagaatgcattaaaatcaccagagcaaagttcca 620

                                                                       
Query: 420 ggaactttaagcaacctggacttcatagcttctttccaagatttatgttagtgtgtgtct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaactttaagcaacctggacttcatagcttctttccaagatttatgttagtgtgtgtct 680

                                           
Query: 480 gtgtgtgcatgggtgcatgtgtgtgtgtgtgt 511
           |||||||||||||||||| |||||||||||||
Sbjct: 681 gtgtgtgcatgggtgcatatgtgtgtgtgtgt 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space:   464610
Effective search space used:   464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)